Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0022 ATGGGCAACGTCTGTTATGGCACTGCTCTGGTCGATAATCATAACCCTTCCACTTATGATTACCCTCCCACCCTCCCTACTACTCCAGAAAGATGCAGAAACAACAGCCAACAACAACAACACGAGTTGTCGCCAAGAATCAACGTCATCGCAGTTGAAGATAAAAATGGAAAAGCGGCAGCTGATGAAAAGATCCCCAAGAATAATAATTATAAAGCTCCGAAGATGTTTACGATAGCAGAGCTAAAGAGCGCAACAAGGAACTTTAGACCAGACACGGTGCTCGGGGAGGGCGGTTTCGGAAGGGTTTTCAAGGGCTGGATCGACCCCAACACCTACGCACCCTCCAAGGTCGGCGCCGGTATGCCTGTTGCCGTTAAAAAGTCCAATCCGGATAGCGATCAGGGATTGCAGGAGTGGCAGGCTGAGGTGAAGTTTCTGGGAAAGTTTTCTCATCCAAACCTCGTAAAACTGCTCGGATTCTGTTTGGAAGAAAAGCAATTCCTTTTGGTTTACGAATACATGCAAAAAGGGAGCTTAGAGAACCACCTGTTCAACAAAAAGGGTGGAGAACCACTTTCGTGGCAACTGCGGCTTAAAATAGCGATTGGGGCGGCGCGTGGGCTGGCTTTCTTACACACTTCGGAGAAGAGCGTCATTTATCGGGACTTCAAGGCCTCCAATATCTTGTTGGACGGAAACTACAACGCCAAGCTATCCGACTTTGGGCTCGCTAAACTGGGTCCATCCAACGGAAATTCTCATGTCACGACGCGCGTTCTTGGCACCTACGGATACGCAGCTCCAGAATATGTTGCAACTGGCCATTTGTACATCAAAAGTGATGTTTACGGTTTCGGAGTCGTTTTGCTGGAATTGCTAACTGGCCTTCCTGCGCTTGATGCAAACCGGCCCAGTGGGTATTACGCCTTGCTGGATTGGGCCAGGCCATCATTGGGTAACAAGAAGAAGCTCCACAAAATTATGGACCCAAGGCTAGGGGGGAACTACTCATCAAAAGGTGCAGCCCAAGCATCCGAGCTTATACTAAAGTGTCTGGAATCGGATCCCAAAAATCGCCCTTCGATGGAACAAGTGTTGGAAACGTTAGAGAAGATCAATGACATCAAAGAAAAGCCCAAAGAAACAAGATCCAATGTTAGAAGGCCCAAAAATCACCAAACCCACCGGTCCAAAAAATGA 1203 48.05 MGNVCYGTALVDNHNPSTYDYPPTLPTTPERCRNNSQQQQHELSPRINVIAVEDKNGKAAADEKIPKNNNYKAPKMFTIAELKSATRNFRPDTVLGEGGFGRVFKGWIDPNTYAPSKVGAGMPVAVKKSNPDSDQGLQEWQAEVKFLGKFSHPNLVKLLGFCLEEKQFLLVYEYMQKGSLENHLFNKKGGEPLSWQLRLKIAIGAARGLAFLHTSEKSVIYRDFKASNILLDGNYNAKLSDFGLAKLGPSNGNSHVTTRVLGTYGYAAPEYVATGHLYIKSDVYGFGVVLLELLTGLPALDANRPSGYYALLDWARPSLGNKKKLHKIMDPRLGGNYSSKGAAQASELILKCLESDPKNRPSMEQVLETLEKINDIKEKPKETRSNVRRPKNHQTHRSKK 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 141578 145708 + Conep20aG0002200.1 Cone20ag0022 459926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0022 400 PANTHER OS01G0588500 PROTEIN-RELATED 64 374 IPR050823 -
Cone20ag0022 400 ProSiteProfiles Protein kinase domain profile. 89 373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0022 400 FunFam Serine/threonine-protein kinase PBS1 175 388 - -
Cone20ag0022 400 CDD STKc_IRAK 95 373 - -
Cone20ag0022 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0022 400 FunFam Serine/threonine-protein kinase BIK1 55 174 - -
Cone20ag0022 400 Pfam Protein tyrosine and serine/threonine kinase 93 370 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0022 400 MobiDBLite consensus disorder prediction 371 389 - -
Cone20ag0022 400 SUPERFAMILY Protein kinase-like (PK-like) 70 373 IPR011009 -
Cone20ag0022 400 Gene3D Transferase(Phosphotransferase) domain 1 175 397 - -
Cone20ag0022 400 MobiDBLite consensus disorder prediction 371 400 - -
Cone20ag0022 400 Gene3D Phosphorylase Kinase; domain 1 59 174 - -
Cone20ag0022 400 ProSitePatterns Protein kinases ATP-binding region signature. 95 128 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1455 Cone-Chr17:9881338 Cone20ag0022 Cone-Chr20:141578 1.44E-203 dispersed
Cone20ag0022 Cone-Chr20:141578 Cone8ag1330 Cone-Chr8:10751564 7.85E-147 dispersed
Cone12ag0862 Cone-Chr12:7722427 Cone20ag0022 Cone-Chr20:141578 1.11E-30 wgd
Cone20ag0022 Cone-Chr20:141578 Cone3ag1248 Cone-Chr3:31298386 6.25E-142 wgd
Cone20ag0022 Cone-Chr20:141578 Cone8ag0892 Cone-Chr8:8700114 2.09E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82527 None None None None Cone PK