Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0023 ATGGAGTTTGAGTCATTGGAAAATGATCACACGGATGATGGTTTTTCAGCCCCATCTATGATGTTAGGTGCTCCAGCTTTGGATATTGATATAGCCTTCATTGATCAATTACTTCTAGGAGGCTCTTGGTTGGAAACCACCAATGGGTCCGAATTGCTTCTTTCCAGTCCTACATACCCAAGTGCTCTCTGCTATCCTACCTTTGGATGGGGAACTACAGACACCAATAATGGTGTTTTGAAGACGAACTCGACTATAAACAACGACCAAGAAAAGGGAGTAAGATCTCTGCTTAATAAGCCTGATTTTGCTCACTACTCGGGTCAATCAGACAAATTTAACCCTGTAGATTCTGAATTAGGAAGAAGGTGCTGTAGTCAACCCCAACCAAATCCGGGTCACGCTTCTTCTGTGATCGAAAGATTAATAAGGGCCATGGATTACATTCAAGAAACTAGTTCCCCTTCTTCAATGCTTGCAAGATACCAAGACATATCAGTGAATTATCAGTTCTCAGCTGAAAAGGATTCTTGTAAGGAAATGGTTGGATTGCCTGGACGGGTTTTCTTGAGTAAGACCCTTCCTGTCTTTGAACAAGGCAGTAGGACTTGCGTTGCTGTCATCGAATTTGTCTTGACCAGCCAGCAGATTAAATACAGCTCCGAGCTTGAAATTGCCTGCAAGGCTCTTCAGTTTGAACTTGAGATTCTGATAGGAGCAAACTTGCTGACATGCAGGCTGTTGAGCTTAGGAGCTGTAATTTCCTACAAAGGTATACTACCAGAGATTCGAGAGGTTTTGAGATTTGCTTGTGAAACCCACAAGTTACCATTAGCTCAAACATGGGTGTCTTGCGTCCAACAAGGCAGAGAGAGTTGTCGGCATTCTGATGAGAACTATGTTCAATGTGTTTCTACAATCGATCATGCTTGCTATGTAGCCGATCCACGTTTTCAGGGCTTTCACAAGGCTTGCTCGGAGCATCACTTGTTAAAAGATGAAGGTATTGTTGGGAAAGCTTTTATGACCAATGAGCCGTGCTTCTCAACCGACATCACGTCCTTTGGCAAAAAGGAATATCCTCTTTCTCACCATGCTAGGGTGTTTGAACTGCGATCTGCAGTCGCTATACGGCTTCGTAGCATTTATGCTAGCAGCAAAGCCGATTTCGTGCTAGAGTTCTTCTTGCCTGTGGATTGTAGAGATGTTGAGGAACAAAGGAAGATGCTTACCTCACTCTCCATCATCATGCGAGAGTCCTTCTCGGCCTTGCGTGTTGTAACAGATGAGGAGGTGAAGGAGGAAACTGATTTGCCACAGGGGGAGGTGGGAGTAACTTCAGATCGAAGGCCAATTGGTAAGAAACAGATGCAAAAACAAGGGCAAGAAGTCCCTGGCATTCCAAATGTAGAGATGAGCAAAACAAGGGAGAAAAGACATAAGAAGGTGGAGAAACCTATCACTTCACGCGCTCTTAGGCAATATTTCTCTGGTGGCCTAAAAGATGCTGCTAAGAGCCTAGGAGTTTGTCCTACAACATGGGAAAGAATATGCCGACGGCACGGGATAGAACGATGGCCTTCTAGAAAAATCCACAAGGTTGGTCACTCGCTGCAGAAACTCCAGCTAGTACTCGACCCCGTCCAAGGCGCATCCGGTTCCTTCTCCCCAAAGTTCTCAGAGCCGGCCTCTACCTTCCCAACACCATTGAAGGCTGTTGATCATCATCATCATCATCAGAAGAGCTCAGAAAGTAAGCAAGAAGACAACAGTGGGAGTAGCAGTTCAAGCCATTGCTGCTCTTCCAGCAGGACACGGTGTCTTAATCCGATCACCCAAGATGACTACGATGATCATGATCAGCAGAAGAGGATCAAAAGTGAAGAAGGGGGGAAAAATATCCTTGCAAGATCTCATGGGGCAAGTCCAAGTACCAACAATCCTACTACTCGCGTAGCCAAAAATAACGTACGGGTATCATCATCACACCAAGAAGATAAGACTCGGAGGGTAAAAGTGAGCTATGGAGACCAGAAAGTGCGATTTCGGATGCATAAGGATTGGAGGTTTAGAGACTTGCTCCAAGAAATTGGAAGGCGATTTGATATAGAGGACATAACAAGAAATGACATCAAGTACATGGACGATGAACTCCGAGTGGGTCCTGTTAACATGTGA 2178 45.0 MEFESLENDHTDDGFSAPSMMLGAPALDIDIAFIDQLLLGGSWLETTNGSELLLSSPTYPSALCYPTFGWGTTDTNNGVLKTNSTINNDQEKGVRSLLNKPDFAHYSGQSDKFNPVDSELGRRCCSQPQPNPGHASSVIERLIRAMDYIQETSSPSSMLARYQDISVNYQFSAEKDSCKEMVGLPGRVFLSKTLPVFEQGSRTCVAVIEFVLTSQQIKYSSELEIACKALQFELEILIGANLLTCRLLSLGAVISYKGILPEIREVLRFACETHKLPLAQTWVSCVQQGRESCRHSDENYVQCVSTIDHACYVADPRFQGFHKACSEHHLLKDEGIVGKAFMTNEPCFSTDITSFGKKEYPLSHHARVFELRSAVAIRLRSIYASSKADFVLEFFLPVDCRDVEEQRKMLTSLSIIMRESFSALRVVTDEEVKEETDLPQGEVGVTSDRRPIGKKQMQKQGQEVPGIPNVEMSKTREKRHKKVEKPITSRALRQYFSGGLKDAAKSLGVCPTTWERICRRHGIERWPSRKIHKVGHSLQKLQLVLDPVQGASGSFSPKFSEPASTFPTPLKAVDHHHHHQKSSESKQEDNSGSSSSSHCCSSSRTRCLNPITQDDYDDHDQQKRIKSEEGGKNILARSHGASPSTNNPTTRVAKNNVRVSSSHQEDKTRRVKVSYGDQKVRFRMHKDWRFRDLLQEIGRRFDIEDITRNDIKYMDDELRVGPVNM 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 143717 147018 - Conep20aG0002300.1 Cone20ag0023 459927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0023 725 MobiDBLite consensus disorder prediction 638 659 - -
Cone20ag0023 725 ProSiteProfiles PB1 domain profile. 668 725 IPR053793 -
Cone20ag0023 725 MobiDBLite consensus disorder prediction 611 633 - -
Cone20ag0023 725 Pfam NLP protein GAF domain 255 424 IPR055081 -
Cone20ag0023 725 MobiDBLite consensus disorder prediction 555 667 - -
Cone20ag0023 725 ProSiteProfiles RWP-RK domain profile. 470 554 IPR003035 -
Cone20ag0023 725 MobiDBLite consensus disorder prediction 587 610 - -
Cone20ag0023 725 SUPERFAMILY CAD & PB1 domains 666 717 - -
Cone20ag0023 725 MobiDBLite consensus disorder prediction 571 586 - -
Cone20ag0023 725 Pfam RWP-RK domain 487 533 IPR003035 -
Cone20ag0023 725 Gene3D - 670 724 - -
Cone20ag0023 725 Pfam PB1 domain 668 718 IPR000270 GO:0005515(InterPro)
Cone20ag0023 725 MobiDBLite consensus disorder prediction 435 484 - -
Cone20ag0023 725 PANTHER PROTEIN NLP8 138 718 IPR045012 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1273 Cone-Chr12:9744882 Cone20ag0023 Cone-Chr20:143717 1.34E-95 dispersed
Cone20ag0023 Cone-Chr20:143717 Cone9ag0876 Cone-Chr9:4266120 7.10E-72 dispersed
Cone20ag0023 Cone-Chr20:143717 Cone3ag1247 Cone-Chr3:31282019 1.86E-99 wgd
Cone20ag0023 Cone-Chr20:143717 Cone4ag2020 Cone-Chr4:14057012 3.92E-177 wgd
Cone20ag0023 Cone-Chr20:143717 Cone7ag1936 Cone-Chr7:12353709 2.29E-178 wgd
Cone20ag0023 Cone-Chr20:143717 Cone8ag1327 Cone-Chr8:10741156 3.87E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015949 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45545 PF12763 EF-hand_4 1.30E-10 CL0220 Cone TF