Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0025 ATGAAAGGAGCAGACGAAAACAACCTTGGCATGATCAGACCCGCAAATCTTCAGGGAGGGGGATTTCATGTTGGAGGTGGCAAAGGCGTGGGAGTAATTAGACAAAACCGTAGAGCATCGAGCAATATTAATAATCGCATCATCATTGGAGTTCCTCCTAATTGCCCAAATGAAATAAACAAAAGGGGCTTGTCTCATAAGCAACCAGTCGGTGGCAAGGACCCAGCCATTCTGGTTCATCGACCAATTACCAGAAGGTTAGCTGCCCAATTAACAATGACACAGCAGCAAATAGCACTTGAAAAAACCAAGGACTCTCTGAAGTTGGTCCCAACTCCAGATGGGTCTGAAAATTCTGATGCTGTAGACGTGAGAGAAAGCAATGCAACAAATAGTGAAACAGCGGTGCCTACGGCTGAGATTGAAATGGAAGATGTAGATGAACAACAGCCTGTTGTAGACATAGATAGTCCTGACAAGATGAATCCCCTTGCAGTTGTGGAGTATATTGAGGATTTATATGCCTACTACAGAAAAGCAGAGAGTTTGTCATGTGTCCCTTCTAACTATTTTGTTCAGCAACCGGACATTAACAAGAAGATGAGAAGTATTCTCATACATTGGCTAATTGAGGTGCATTGCAAGTTTGAACTAATGACTGAAACCTTATACCTGACCGTGAACCTGATCGACAGATTTTTGGCGGTTCAGCCCATTGTTGGGAAGAAGCTCCAACTAGTCGGTGTGACTGCAATGCTACTTGCTTGCAAATATGAAGAAGTTTCTGTTCCCATTGTAGAAGATTTCATTTTGATCACTGATAGGGCTTACAGCAGGAAGGAAGTGCTTGATATGGAAAAATTGATGGTAAATACTTTACAGTTTAACCTGTCAGTTCCCACAGCCTATGTGTTTATGAGGAGGTTTCTCAAAGCTGCTCAATCTAACAATGAGCTCGAACAACTGTCCTTTTTCATGATCGAGCTTTGCCTGGTTGACTACGAAATGCTCAAATTTCGACCATCTATGTTAGCTGCTGCAGTGATTTTCACAGCTCAGTGTGCTCTCAACGGGACTAAGCAATGGTGTAAGACAAAGGACTGCTCGAGGATGATGGGTACTTTACATCAGAAAGCCGGAACTGGAAAGCTCACTGGAGTTTATCGGAAGTACTGCACATCGAAGTTAGGATATGGAAGTTTTCTCCTCGGAGGATGA 1218 43.1 MKGADENNLGMIRPANLQGGGFHVGGGKGVGVIRQNRRASSNINNRIIIGVPPNCPNEINKRGLSHKQPVGGKDPAILVHRPITRRLAAQLTMTQQQIALEKTKDSLKLVPTPDGSENSDAVDVRESNATNSETAVPTAEIEMEDVDEQQPVVDIDSPDKMNPLAVVEYIEDLYAYYRKAESLSCVPSNYFVQQPDINKKMRSILIHWLIEVHCKFELMTETLYLTVNLIDRFLAVQPIVGKKLQLVGVTAMLLACKYEEVSVPIVEDFILITDRAYSRKEVLDMEKLMVNTLQFNLSVPTAYVFMRRFLKAAQSNNELEQLSFFMIELCLVDYEMLKFRPSMLAAAVIFTAQCALNGTKQWCKTKDCSRMMGTLHQKAGTGKLTGVYRKYCTSKLGYGSFLLGG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 155965 158976 + Conep20aG0002500.1 Cone20ag0025 459929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0025 405 PANTHER CYCLINS 148 391 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone20ag0025 405 Pfam Cyclin, N-terminal domain 172 298 IPR006671 -
Cone20ag0025 405 ProSitePatterns Cyclins signature. 202 233 IPR048258 -
Cone20ag0025 405 PIRSF Cyclin_A_B_D_E 65 402 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone20ag0025 405 PIRSF Cyclin_A_B_D_E 33 150 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone20ag0025 405 SUPERFAMILY Cyclin-like 299 398 IPR036915 -
Cone20ag0025 405 SMART Cyclin_C_2 300 405 IPR004367 -
Cone20ag0025 405 SUPERFAMILY Cyclin-like 162 297 IPR036915 -
Cone20ag0025 405 Gene3D - 172 395 - -
Cone20ag0025 405 CDD CYCLIN_AtCycB-like_rpt1 151 295 - -
Cone20ag0025 405 Gene3D - 186 298 - -
Cone20ag0025 405 MobiDBLite consensus disorder prediction 108 135 - -
Cone20ag0025 405 Pfam Cyclin, C-terminal domain 300 397 IPR004367 -
Cone20ag0025 405 SMART cyclin_7 207 291 IPR013763 -
Cone20ag0025 405 SMART cyclin_7 304 393 IPR013763 -
Cone20ag0025 405 FunFam G2/mitotic-specific cyclin 186 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0025 Cone-Chr20:155965 Cone6ag1701 Cone-Chr6:12844184 3.90E-126 dispersed
Cone12ag0859 Cone-Chr12:7710310 Cone20ag0025 Cone-Chr20:155965 7.56E-106 wgd
Cone17ag1451 Cone-Chr17:9849759 Cone20ag0025 Cone-Chr20:155965 3.13E-228 wgd
Cone20ag0025 Cone-Chr20:155965 Cone4ag2018 Cone-Chr4:14050059 2.02E-139 wgd
Cone20ag0025 Cone-Chr20:155965 Cone7ag1934 Cone-Chr7:12340108 1.39E-156 wgd
Cone20ag0025 Cone-Chr20:155965 Cone8ag0889 Cone-Chr8:8686330 5.89E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0025 K21777 - rcu:8273611 451.055