Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0029 ATGCTACTTTTGCCCCCGCCATTTTCGACTCGTTTCCCTTCAGTTAAATTCAGTTATCCAATTCTCTTCCGCCACAACCACCACCACCACCACCTTGTTCCCCAACTACCTTTTCTACTCACAACCGCCACTTCAACTGCCGATACCATCACCACCTCCGCTGAGATTTACTTCTCTTCCGCTAAACCACTCGAAGTCGACGATAACAATATCGTTTCCCTCCAAAACCGCCGGTACGACTTCACTCCCCTCCTCACCTACCTCTCCAAATCCTCGCAAGCCAGCATAACCGCCATAAACTCTGACTCCATTCCGGATTCCGACTCGGACCACCCTTCTCCGACATCACTTGACCCGATTGAGTTCCAGATGGCCGAGTCTTACCGGGCCGTGCCCGCTCCACTCTGGCACTCCCTTCTGAAATCTCTCTGCTCCTCCTCCTCCTCTATAGGACTAGCATACGCCGTCGTTTCCTGGCTCCAGAGGCATAAACTCTGTTTCTCTTACGAATTGCTCTACTCAATTCTCATTCACGCACTCGGCCGCTCGGAGAAGCTCTACGAAGCTTTCTTACTCTCTCAGAGACAAACCCTAACTCCTCTAACTTACAACGCGCTTATCGGAGCTTGTGCTCGTAACGATGACCTAGAGAAGGCGCTCAATTTGATGTCTAGGATGCGTCAAGATGGTTTCCAGTCCGATTTCGTGAATTACAGTTTGATAATTCAATCTCTTACACGCGCGAACAAGATTGATCTTCCAATTTTACAGAAACTTTACGCAGAGATTGAATCAGATAAGATTGAGCTAGATGGACAACTCCTGAATGATATCATTGTAGGTTTTGCAAAAGCTGGTGATCCGAGCAGTGCTATGTACTTCCTAGACATGGTTCAGGCTAGTGGGCTGAGCCCTAAAACTGCAACTTTTGTGGCGGTTCTATCTGCATTAGGAAATTCTGGCAGGACAGTTGAAGCTGAGGCGATTTTTGTCGAAATGAAAGAAGGTGGATTAGAACCAAGGACTAGAGCTTATAACGCACTCCTTAAGGGATATGTAAGAAGAGGTTCGTTGAAAGATGCAGAATCAATAGTTTCAGAGATGGAGAAGACTGGAGTATCACCAGATGAACATACTTATAGTCTTCTCATCGATGCTTATGTGAATGCAGGTAGGTGGGAAAGTGCTAGAATTGTGCTTAAAGAAATGGAAGCTAGAAATGTGCAGCCTAATTCCTTTGTGTTTAGTAGGATTCTAGCTGGTTATAGGGACAGAGGGGAATGGCAAAAGACATTTCAAGTCTTGAGAGAAATGAAGAATAGTGGGGTTAAACCCGATAGGCATTTTTACAATGTTGTGATTGATACTTTTGGCAAGTTTAATTGTCTTGATCATGCCATGGAAACATTTGAGCGTATGCTGTCTGAGGGGATTGAGCCAGACACTGTTACATGGAATACGCTTATAGATTGTCATTGCAAGGCGGGCCGCCACAATAGGGCGGAAGAATTGTTTGAGGAAATGCATGAACGCGGTTGCTCTCCTTGTGCTACGACATATAATATTATGATTAATTCGTTTGGAGAGCAGGAAAAGTGGGAAGAAGTGAAAAGTTTGTTAGGGAAGATGCAGAGTCAGGGTTTACTTCCTAATGTAGTAACATACACTACTCTTGTCGATATATATGGAAAGTCGGGAAGATTTAATGATGCAATTGAGTGCTTGGAGGTGATGAAGTCTGCTGGGTTGAAGCCATCTTCCACGATGTATAATGCTTTGATTAATGCTTATGCACAAAGGGGTTTGTCAGAGCAGGCAGTAAATGCGTTCAGGGTTATGAGGGCAGATGGTCTAAAGCCCAGTCTTTTAGCTCTAAATTCATTGATTAATGCATTTGGTGAGGATAGAAGGGATGTGGAAGCCTTTGCAGTCTTGCAGTACATGAAGGAAAACGTAAGCTTAAGGATGTGA 1971 44.7 MLLLPPPFSTRFPSVKFSYPILFRHNHHHHHLVPQLPFLLTTATSTADTITTSAEIYFSSAKPLEVDDNNIVSLQNRRYDFTPLLTYLSKSSQASITAINSDSIPDSDSDHPSPTSLDPIEFQMAESYRAVPAPLWHSLLKSLCSSSSSIGLAYAVVSWLQRHKLCFSYELLYSILIHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRQDGFQSDFVNYSLIIQSLTRANKIDLPILQKLYAEIESDKIELDGQLLNDIIVGFAKAGDPSSAMYFLDMVQASGLSPKTATFVAVLSALGNSGRTVEAEAIFVEMKEGGLEPRTRAYNALLKGYVRRGSLKDAESIVSEMEKTGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEARNVQPNSFVFSRILAGYRDRGEWQKTFQVLREMKNSGVKPDRHFYNVVIDTFGKFNCLDHAMETFERMLSEGIEPDTVTWNTLIDCHCKAGRHNRAEELFEEMHERGCSPCATTYNIMINSFGEQEKWEEVKSLLGKMQSQGLLPNVVTYTTLVDIYGKSGRFNDAIECLEVMKSAGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMRADGLKPSLLALNSLINAFGEDRRDVEAFAVLQYMKENVSLRM 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 168018 171215 - Conep20aG0002900.1 Cone20ag0029 459933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0029 656 Gene3D Tetratricopeptide repeat domain 119 252 IPR011990 GO:0005515(InterPro)
Cone20ag0029 656 Gene3D Tetratricopeptide repeat domain 417 529 IPR011990 GO:0005515(InterPro)
Cone20ag0029 656 Pfam PPR repeat 626 651 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Cone20ag0029 656 Pfam PPR repeat family 480 527 IPR002885 -
Cone20ag0029 656 Pfam PPR repeat family 202 245 IPR002885 -
Cone20ag0029 656 Pfam PPR repeat family 342 387 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Cone20ag0029 656 FunFam Pentatricopeptide repeat-containing protein, chloroplastic isoform A 422 531 - -
Cone20ag0029 656 Pfam Pentatricopeptide repeat domain 538 599 IPR002885 -
Cone20ag0029 656 Pfam Pentatricopeptide repeat domain 399 459 IPR002885 -
Cone20ag0029 656 Pfam Pentatricopeptide repeat domain 259 319 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Cone20ag0029 656 FunFam Pentatricopeptide repeat-containing protein, chloroplastic isoform A 310 421 - -
Cone20ag0029 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Cone20ag0029 656 PANTHER OS03G0856100 PROTEIN 372 651 - -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 414 446 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 553 586 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 589 621 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 483 515 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 202 234 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 309 340 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 344 377 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 378 411 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 519 552 IPR002885 -
Cone20ag0029 656 NCBIfam pentatricopeptide repeat 450 482 IPR002885 -
Cone20ag0029 656 Gene3D Tetratricopeptide repeat domain 530 655 IPR011990 GO:0005515(InterPro)
Cone20ag0029 656 Gene3D Tetratricopeptide repeat domain 253 406 IPR011990 GO:0005515(InterPro)
Cone20ag0029 656 FunFam Pentatricopeptide repeat-containing protein, chloroplastic isoform A 132 298 - -
Cone20ag0029 656 SUPERFAMILY TPR-like 377 576 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0029 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1447 Cone-Chr17:9839936 Cone20ag0029 Cone-Chr20:168018 4.26E-18 transposed
Cone17ag1446 Cone-Chr17:9839047 Cone20ag0029 Cone-Chr20:168018 1.06E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0029 . . . . . . Bda08g01169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009283 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33