Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0051 ATGGTAAAGTTGGTATCTTGTTTTTCTCCATTTCTGTTTCCCTCCCCCTCTCGCTTTGGCTTCTGTACTAACAGCTCCTCACCATTCATTCTAATAACTCCTTACAAGTTCTCAAGCCAGTCAACAACAGTTCAAGATGCTCTTAGCATTCCTCGATCCTCTCTCGTTTCAGCTTTGGTTGCTGCTGTAAGCTCATGCACGTCCTCGTCCCATTGCCGGACGATACATGCTCGAGTTATAAAATCTATGTGTTATAAAGATGGATTCCTTGGTGATCAGTTAGTCACTTGTTATGTTAAATTGGGACATTCAGATGATGCAAAGAAGCTGTTCGACCAAATGCCTAATAAGGATTTGGTATCCTGGAATTCGTTGATGTCAAGTTTTTCACGGCGAGGTTGTCTTGATATGTGCCTGGAAGTATTTTGCAAGATGAAGTTTGATATGCTGAGAAAACCTAATGAGGTTACTCTTTTATCCATATTATCAGCTTGTACTGATATGGGAGAGTTGGATACCGGAAGGTACATTCATGGTTTTGCATACAAAATTGGAATATTGATAGAAGCTAAGGTTGTTAATTCTCTCATTAACATGTATGGAAAGTCTAACTATTTATACGAGGCTTGTAGATTGTTTGAGTCCATGTCGGTCCCCAGTATCGTATCATGGAATTCAGTTATTGGAATTCATACTAACAACGGCTTTGTACAGGAAGGAATTGACTGTTTCAATAGGATGAGAAGGATTGGCATTCGGCCCGATGATGGAACAATGGTTGCTTTGCTTCAAGCTTGTGATGATTTTGGTGTAGTAAACTTTGCAGGGGGTATTCATGCTTTAATATTCAGTTGCGGTTTAAATGAAAATGTCACGGTTACAACCGCAGTCTTAGACTTGTATGCAAAGTTGGGGAGATTAAACTCTGCACGTAAAGTATTTGAAGAGATTAGTAACCCGGATAAAGTAGCTTGGACTGCAATGGTAGCGGGATTTGCTGTTCACGGATTTGGAAGAGAAGCAGTCGAGCTTTTTGAAAGCATGGTTAAGGAAGAAGGTAAAGAGCCGGATCATGTCACTTTCACTCATTTATTGAGTGCTTGTAGTCATTCGGGGCTTGTCAAGGAAGGGAAGTATTACTTCAAAGTTATGAGTCAGGTTTATGCAGTTGAACCCAGGTTGGATCACTACTCATGCATGGTTGATCTTCTGGGCAGAAGTGGACATCTAAATGATGCTTACGAGATGATTAAAAGCATGCCAATGGAGGCGAATTCTGGTGTATGGGGTGCTCTTCTTGGTGCTTGTCGGGTTTATAAAAACATTGAACTTGGTAAGAAAGTTGCAGAGAGGCTGTTTCATTTGGAACCTTGTGATGCAAGAAACTATGTAATGCTAGCAAATATATACTCTGCCTCTCATTTATGGAAGGATGCGTCTAAAGTGAGGGCCCTGATGAAAGAAAGAGGTGCAGTTAGAAACCCTGGGTGCAGTTCCATCGAACATGGCAACCGGATTCACCGTTTTGCAGCGGGTGATCGATCTCACCCTGAAACGGAGAAGATATATATGAAGTTGGAAGAATTGATTGGGAAAATCAGGGAAGCTGGGTTTGTTTCGAAAACAGAGTTCGTACTGCATGATGTGGACGAGGGAGTGAAGGAAGATATGGTGAATAAGCACAGTGAGAAGTTAGCTATTGCCTTTGGTCTTTTGGTTACTGATTCTTGCACGCCATTAGTGATAAGAAAGAATCTTAGAATCTGTGGAGACTGTCATAGCAGTGCGAAGATGATTTCTTTAATTGAGAAGCGTCTTATCATTATTCGAGATCCAAAACGGTTTCACCATTTTGCAGATGGGTTGTGTTCTTGTGGGGATTATTGGTAA 1890 41.16 MVKLVSCFSPFLFPSPSRFGFCTNSSSPFILITPYKFSSQSTTVQDALSIPRSSLVSALVAAVSSCTSSSHCRTIHARVIKSMCYKDGFLGDQLVTCYVKLGHSDDAKKLFDQMPNKDLVSWNSLMSSFSRRGCLDMCLEVFCKMKFDMLRKPNEVTLLSILSACTDMGELDTGRYIHGFAYKIGILIEAKVVNSLINMYGKSNYLYEACRLFESMSVPSIVSWNSVIGIHTNNGFVQEGIDCFNRMRRIGIRPDDGTMVALLQACDDFGVVNFAGGIHALIFSCGLNENVTVTTAVLDLYAKLGRLNSARKVFEEISNPDKVAWTAMVAGFAVHGFGREAVELFESMVKEEGKEPDHVTFTHLLSACSHSGLVKEGKYYFKVMSQVYAVEPRLDHYSCMVDLLGRSGHLNDAYEMIKSMPMEANSGVWGALLGACRVYKNIELGKKVAERLFHLEPCDARNYVMLANIYSASHLWKDASKVRALMKERGAVRNPGCSSIEHGNRIHRFAAGDRSHPETEKIYMKLEELIGKIREAGFVSKTEFVLHDVDEGVKEDMVNKHSEKLAIAFGLLVTDSCTPLVIRKNLRICGDCHSSAKMISLIEKRLIIIRDPKRFHHFADGLCSCGDYW 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 251428 253322 - Conep20aG0005200.1 Cone20ag0051 459955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0051 629 Gene3D Tetratricopeptide repeat domain 272 350 IPR011990 GO:0005515(InterPro)
Cone20ag0051 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Cone20ag0051 629 Gene3D Tetratricopeptide repeat domain 351 566 IPR011990 GO:0005515(InterPro)
Cone20ag0051 629 NCBIfam pentatricopeptide repeat 94 119 IPR002885 -
Cone20ag0051 629 NCBIfam pentatricopeptide repeat 323 357 IPR002885 -
Cone20ag0051 629 NCBIfam pentatricopeptide repeat 120 146 IPR002885 -
Cone20ag0051 629 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Cone20ag0051 629 FunFam Putative pentatricopeptide repeat-containing protein 291 555 - -
Cone20ag0051 629 Pfam E motif 439 501 IPR046848 -
Cone20ag0051 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 356 IPR002885 -
Cone20ag0051 629 Pfam PPR repeat 120 146 IPR002885 -
Cone20ag0051 629 Pfam PPR repeat 396 421 IPR002885 -
Cone20ag0051 629 Pfam PPR repeat 94 117 IPR002885 -
Cone20ag0051 629 Pfam PPR repeat 295 317 IPR002885 -
Cone20ag0051 629 Pfam PPR repeat 194 216 IPR002885 -
Cone20ag0051 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Cone20ag0051 629 FunFam Pentatricopeptide repeat-containing protein At5g40410, mitochondrial 177 273 - -
Cone20ag0051 629 Pfam E+ motif 506 533 IPR046849 -
Cone20ag0051 629 PANTHER OS07G0578800 PROTEIN-RELATED 174 522 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone20ag0051 629 Pfam PPR repeat family 219 266 IPR002885 -
Cone20ag0051 629 Pfam PPR repeat family 320 369 IPR002885 -
Cone20ag0051 629 Pfam DYW family of nucleic acid deaminases 537 629 IPR032867 GO:0008270(InterPro)
Cone20ag0051 629 Gene3D Tetratricopeptide repeat domain 37 177 IPR011990 GO:0005515(InterPro)
Cone20ag0051 629 Gene3D Tetratricopeptide repeat domain 182 271 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0051 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0051 Cone-Chr20:251428 Cone11ag0020 Cone-Chr11:125461 1.10E-132 dispersed
Cone20ag0051 Cone-Chr20:251428 Cone13ag0771 Cone-Chr13:7258763 2.86E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24