Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0052 ATGATGAACTCCCATGAAGCTATTGTTATGGACCCAACTCTTTTCTGGGACACTCTAAAGCGCTTTCATTTCATGATGAACACTAAATTTATGGTTCCTGTTATTGGAGGAAAAGAGCTTGACCTGCATATATTATATTCAGAGGTTACAAAAAGGGGTGGTTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTAGGGAATGTATTCTGCTTCTCCTCAACGACAACAAGTGCTTCTTTTGTATTGAGGAGGCACTACTTGAAGCTTCTTTACCATTTTGAGCTCCTTTACTTCTTTCAGAGACGGAGTCCTCCTCTTTCTAGTATTACGCCAACTGCACATTCTGTTAGCAACACATCATGCAAGAACGAATTGGCTCTTGTAGAATACACCCCCAAAACGATGCCGTTTCACCCATCTCCGCCTGTTGAAGGGATTGGAACAATTGAAGGGAAGTTTGAGTGTGGTTATTTGGTGACTGTAAAACTGGGTTCTGAGATGCTCAGGGGAGTACTTTACCATCCAGAACAGGTTGATGATGAACTTGATCCTACAGTTCCTAAATATAACAATAATGCAATTGTTCCATACACTGGAAAGCGGCAAGTTTTCAGTGACCGTCGTCGCCGGAGAAGCAGACGAAGAGCAGACCCTAATTACCCAAAACCAAACCGGAGCGGTTATAACTTCTTCTTTGCAGACAAGCATTACAAGCTCAAATCTCTATACCCAAACAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAACAATCTCTGTCCAGAAGACAGGATGGTTTACCAGAACATCAGCGTGAAAGATAAGGAAAGATACGAAAGGGAGTTGAAAGTGTACAAGGAGAGAATGAGCCAGACCATGGATGATGAGGCAGCTGCTTCTCATTACTAG 921 42.67 MMNSHEAIVMDPTLFWDTLKRFHFMMNTKFMVPVIGGKELDLHILYSEVTKRGGYEKVVAEKKWREVGNVFCFSSTTTSASFVLRRHYLKLLYHFELLYFFQRRSPPLSSITPTAHSVSNTSCKNELALVEYTPKTMPFHPSPPVEGIGTIEGKFECGYLVTVKLGSEMLRGVLYHPEQVDDELDPTVPKYNNNAIVPYTGKRQVFSDRRRRRSRRRADPNYPKPNRSGYNFFFADKHYKLKSLYPNREREFTKMIGESWNNLCPEDRMVYQNISVKDKERYERELKVYKERMSQTMDDEAAASHY 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 254125 255520 + Conep20aG0005300.1 Cone20ag0052 459956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0052 306 Coils Coil 279 299 - -
Cone20ag0052 306 Pfam ARID/BRIGHT DNA binding domain 13 96 IPR001606 GO:0003677(InterPro)
Cone20ag0052 306 SUPERFAMILY HMG-box 220 296 IPR036910 -
Cone20ag0052 306 CDD ARID_HMGB9-like 11 96 IPR045303 GO:0003677(InterPro)
Cone20ag0052 306 Pfam HMG (high mobility group) box 223 290 IPR009071 -
Cone20ag0052 306 SUPERFAMILY ARID-like 6 107 IPR036431 GO:0003677(InterPro)
Cone20ag0052 306 ProSiteProfiles ARID domain profile. 9 100 IPR001606 GO:0003677(InterPro)
Cone20ag0052 306 Gene3D - 3 110 IPR036431 GO:0003677(InterPro)
Cone20ag0052 306 SMART hmgende2 222 291 IPR009071 -
Cone20ag0052 306 SMART ARID_2 6 96 - -
Cone20ag0052 306 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 298 - -
Cone20ag0052 306 MobiDBLite consensus disorder prediction 206 225 - -
Cone20ag0052 306 SMART bright_3 10 101 IPR001606 GO:0003677(InterPro)
Cone20ag0052 306 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 223 290 IPR009071 -
Cone20ag0052 306 CDD HMG-box_AtHMGB9-like 223 289 - -
Cone20ag0052 306 Gene3D High mobility group box domain 207 304 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0052 Cone-Chr20:254125 Cone4ag0406 Cone-Chr4:1842806 1.31E-70 dispersed
Cone17ag1432 Cone-Chr17:9780674 Cone20ag0052 Cone-Chr20:254125 1.03E-206 wgd
Cone20ag0052 Cone-Chr20:254125 Cone4ag1987 Cone-Chr4:13923663 1.13E-137 wgd
Cone20ag0052 Cone-Chr20:254125 Cone7ag1916 Cone-Chr7:12263604 2.27E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45546 PF07714 PK_Tyr_Ser-Thr 7.50E-26 CL0016 Cone TR