Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0052 ATGATGAACTCCCATGAAGCTATTGTTATGGACCCAACTCTTTTCTGGGACACTCTAAAGCGCTTTCATTTCATGATGAACACTAAATTTATGGTTCCTGTTATTGGAGGAAAAGAGCTTGACCTGCATATATTATATTCAGAGGTTACAAAAAGGGGTGGTTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTAGGGAATGTATTCTGCTTCTCCTCAACGACAACAAGTGCTTCTTTTGTATTGAGGAGGCACTACTTGAAGCTTCTTTACCATTTTGAGCTCCTTTACTTCTTTCAGAGACGGAGTCCTCCTCTTTCTAGTATTACGCCAACTGCACATTCTGTTAGCAACACATCATGCAAGAACGAATTGGCTCTTGTAGAATACACCCCCAAAACGATGCCGTTTCACCCATCTCCGCCTGTTGAAGGGATTGGAACAATTGAAGGGAAGTTTGAGTGTGGTTATTTGGTGACTGTAAAACTGGGTTCTGAGATGCTCAGGGGAGTACTTTACCATCCAGAACAGGTTGATGATGAACTTGATCCTACAGTTCCTAAATATAACAATAATGCAATTGTTCCATACACTGGAAAGCGGCAAGTTTTCAGTGACCGTCGTCGCCGGAGAAGCAGACGAAGAGCAGACCCTAATTACCCAAAACCAAACCGGAGCGGTTATAACTTCTTCTTTGCAGACAAGCATTACAAGCTCAAATCTCTATACCCAAACAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAACAATCTCTGTCCAGAAGACAGGATGGTTTACCAGAACATCAGCGTGAAAGATAAGGAAAGATACGAAAGGGAGTTGAAAGTGTACAAGGAGAGAATGAGCCAGACCATGGATGATGAGGCAGCTGCTTCTCATTACTAG 921 42.67 MMNSHEAIVMDPTLFWDTLKRFHFMMNTKFMVPVIGGKELDLHILYSEVTKRGGYEKVVAEKKWREVGNVFCFSSTTTSASFVLRRHYLKLLYHFELLYFFQRRSPPLSSITPTAHSVSNTSCKNELALVEYTPKTMPFHPSPPVEGIGTIEGKFECGYLVTVKLGSEMLRGVLYHPEQVDDELDPTVPKYNNNAIVPYTGKRQVFSDRRRRRSRRRADPNYPKPNRSGYNFFFADKHYKLKSLYPNREREFTKMIGESWNNLCPEDRMVYQNISVKDKERYERELKVYKERMSQTMDDEAAASHY 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 254125 255520 + Conep20aG0005300.1 Cone20ag0052 459956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0052 306 Coils Coil 279 299 - -
Cone20ag0052 306 Pfam ARID/BRIGHT DNA binding domain 13 96 IPR001606 GO:0003677(InterPro)
Cone20ag0052 306 SUPERFAMILY HMG-box 220 296 IPR036910 -
Cone20ag0052 306 CDD ARID_HMGB9-like 11 96 IPR045303 GO:0003677(InterPro)
Cone20ag0052 306 Pfam HMG (high mobility group) box 223 290 IPR009071 -
Cone20ag0052 306 SUPERFAMILY ARID-like 6 107 IPR036431 GO:0003677(InterPro)
Cone20ag0052 306 ProSiteProfiles ARID domain profile. 9 100 IPR001606 GO:0003677(InterPro)
Cone20ag0052 306 Gene3D - 3 110 IPR036431 GO:0003677(InterPro)
Cone20ag0052 306 SMART hmgende2 222 291 IPR009071 -
Cone20ag0052 306 SMART ARID_2 6 96 - -
Cone20ag0052 306 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 298 - -
Cone20ag0052 306 MobiDBLite consensus disorder prediction 206 225 - -
Cone20ag0052 306 SMART bright_3 10 101 IPR001606 GO:0003677(InterPro)
Cone20ag0052 306 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 223 290 IPR009071 -
Cone20ag0052 306 CDD HMG-box_AtHMGB9-like 223 289 - -
Cone20ag0052 306 Gene3D High mobility group box domain 207 304 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0052 Cone-Chr20:254125 Cone4ag0406 Cone-Chr4:1842806 1.31E-70 dispersed
Cone17ag1432 Cone-Chr17:9780674 Cone20ag0052 Cone-Chr20:254125 1.03E-206 wgd
Cone20ag0052 Cone-Chr20:254125 Cone4ag1987 Cone-Chr4:13923663 1.13E-137 wgd
Cone20ag0052 Cone-Chr20:254125 Cone7ag1916 Cone-Chr7:12263604 2.27E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45546 PF07714 PK_Tyr_Ser-Thr 7.50E-26 CL0016 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0052 - - - 0.0