Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0057 ATGAGGAAAGAGGGGGATCATCTCTACTTCCTTAATAATGGTAGTCAAGCTCAGACAAACGATGTCGTTCCTGAGAGTTCCTTATCCGTAAGCTCAAGATATTCTTCTCTTCTGGCCTCTAGAGATCGCGATTATCTGCTCTCTTCAACTGGAGCTCGGGTAAATATTTCTGATTTGGAAGGAAAAGTCATAGGTTTATACTTTTCGGCAAACTGGTACTCACCGTGCCGGAACTTCACCAAAATCCTTGTCGGAATCTACGAGGAGCTTAAGAACAATGGTTGTAATAACTTCGAGATTGTCTACGTATCCTCGGACGAAGATTCAGATGCATTTAACAACTACCACGGTCTCATGCCATGGCTGGCCATTCCATTCTCCGACTTAGAAACAAAGAAAAACTTAAACCAGAAGTTCGACATTGAAGGCATTCCGAGCTTAGTCGTAATGCAACCTCACGATAACAAGGACGAAGAATTGTTACACGACGGGGTCGAGCTTGTATACCGGTACGGCGTAGAAGCATTCCCTTTCACTCGAGGGAGGCTACGTGAACTGGAAAAGCAAGAGCGGGAAAGACAAGAGAATCAGACACTAACCAGTTTACTAACAAATCTTGATAGAGACTATCTCTTGGGTCAACCCATGCTTAGAAAGGTGCCTGTAGCATCACTAATAGGTAAAACAATTGGACTGTATTTCACAGCCGAATGGTGCAGCCCAGGTGTGAAGTTCACATCTAGGCTTATCTTTGTCTACCACAAAATAAAGCAACAACTAGAAGACAAGCAAGGAAATGAGGATTTTGAGATAGTTTTTGTCTCAAGCGATCGTGATCAGACATCGTTTTCTTCACACTTCGAGTCGATGCCGTGGCTCTGTTTGCCGTTTGGAGATCCAATGTACAAGAACCTCGTGAGGCATTTCGACGTGCAAGAGATACCTTGTTTGATAGTACTCGGGCCTGACGGTAAAACCGTGACAAAAAACGGAAGGAATCTGATTAATTTGTATTTGGAGAATGCTTATCCTTTTACTGAGGCTAAATTAGAGACGATAGAGAAACAGCTGAATGAGGAAGCGAAGAGCTTGCCTAAATCAGTGACACATCAGGGGCACAGACATGTAATTACTTTGGTGTCTGAAGGGAATGGAGGAGGACCATTCATTTGCTGTGACTGTGATGAGCAGGGCTTTGGCTGGGCATATCAGTGCCTAGATTGTGGATATGAGGTGCACCCTAAGTGTGTTAGTACTGCTACTGCTGTTGTAAAGGATCCTGGCTCCAACTAG 1293 44.08 MRKEGDHLYFLNNGSQAQTNDVVPESSLSVSSRYSSLLASRDRDYLLSSTGARVNISDLEGKVIGLYFSANWYSPCRNFTKILVGIYEELKNNGCNNFEIVYVSSDEDSDAFNNYHGLMPWLAIPFSDLETKKNLNQKFDIEGIPSLVVMQPHDNKDEELLHDGVELVYRYGVEAFPFTRGRLRELEKQERERQENQTLTSLLTNLDRDYLLGQPMLRKVPVASLIGKTIGLYFTAEWCSPGVKFTSRLIFVYHKIKQQLEDKQGNEDFEIVFVSSDRDQTSFSSHFESMPWLCLPFGDPMYKNLVRHFDVQEIPCLIVLGPDGKTVTKNGRNLINLYLENAYPFTEAKLETIEKQLNEEAKSLPKSVTHQGHRHVITLVSEGNGGGPFICCDCDEQGFGWAYQCLDCGYEVHPKCVSTATAVVKDPGSN 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 279156 281902 - Conep20aG0005900.1 Cone20ag0057 459961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0057 430 Pfam C1 domain 372 417 IPR004146 -
Cone20ag0057 430 CDD C1 391 421 - -
Cone20ag0057 430 Pfam Thioredoxin-like 227 325 IPR012336 -
Cone20ag0057 430 Pfam Thioredoxin-like 61 152 IPR012336 -
Cone20ag0057 430 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 372 424 IPR002219 -
Cone20ag0057 430 SMART c1_12 373 422 IPR002219 -
Cone20ag0057 430 ProSiteProfiles Thioredoxin domain profile. 17 170 IPR013766 -
Cone20ag0057 430 SUPERFAMILY Thioredoxin-like 46 154 IPR036249 -
Cone20ag0057 430 Gene3D Glutaredoxin 213 346 - -
Cone20ag0057 430 Gene3D Glutaredoxin 38 179 - -
Cone20ag0057 430 PANTHER THIOREDOXIN 32 404 IPR052259 -
Cone20ag0057 430 SUPERFAMILY Thioredoxin-like 219 328 IPR036249 -
Cone20ag0057 430 ProSiteProfiles Thioredoxin domain profile. 188 358 IPR013766 -
Cone20ag0057 430 SUPERFAMILY Cysteine-rich domain 357 419 IPR046349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0057 K17609 - - mdm:103450351 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1033 Cone-Chr19:7677626 Cone20ag0057 Cone-Chr20:279156 1.80E-98 dispersed
Cone19ag1034 Cone-Chr19:7681639 Cone20ag0057 Cone-Chr20:279156 1.22E-78 dispersed
Cone20ag0057 Cone-Chr20:279156 Cone20ag0625 Cone-Chr20:3736534 5.42E-84 dispersed
Cone17ag1426 Cone-Chr17:9756747 Cone20ag0057 Cone-Chr20:279156 5.85E-217 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1426 Cone20ag0057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30