Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0059 ATGGCCAAGTTCCTCATTTCTTGCATCTTCTTGATTGGCTGCGTTTATAACCTCTTCCTCAATGCCAATGCGTTTACTTCTTCCATCTGGACCAAAGCCCACGCCACCTTCTACGGCGGTAGTGACGCTTCCGGAACAATGGGCGGAGCTTGCGGATATGGGAATTTGTACACGACTGGGTACGGAACGAGGACAGCGGCTCTGAGCACAGCACTGTTCAACGACGGAGCTGCTTGTGGTCAATGCTATCGGATGGTATGCGATTACAATACAGATCCCACTTGGTGTAGAAAGGGAGTTTCTGTTACTATAACTGCTACAAATTTCTGCCCTCCAAATTACGCTCAAGCTAGCGACGATGGCGGTTGGTGCAATCCCCCTCGCCAACACTTCGACATGGCGCAGCCCGCTTGGGAGAAGATAGCCATTTACAAAGGCGGCATCGTCCCCATTTTGTACCAGAGGGTTGCTTGCGTGAAGAAGCATGGAGTGAGATTCACGATCAACGGACGAGATTACTTTGAGCTAGTTCTGATATCAAATGTGGGTGGGGCCGGGTCGGTGTCATCTGTTATGATCAAGGGTTCTAAAACGAACTGGATCTCGATGTCGAGGAACTGGGGAGCGAACTGGCAGTCGAATAATTATCTAAACGGCCAATCACTATCTTTCTCTGTTACAACTAACGATGGGCAGACCAGAGTTTTTAACAACATCGTGCCTTCTAATTGGCAATTTGGTCAAACTTATGCTGCAAGTGCTAAGCTGCAATTCACTTGA 780 48.59 MAKFLISCIFLIGCVYNLFLNANAFTSSIWTKAHATFYGGSDASGTMGGACGYGNLYTTGYGTRTAALSTALFNDGAACGQCYRMVCDYNTDPTWCRKGVSVTITATNFCPPNYAQASDDGGWCNPPRQHFDMAQPAWEKIAIYKGGIVPILYQRVACVKKHGVRFTINGRDYFELVLISNVGGAGSVSSVMIKGSKTNWISMSRNWGANWQSNNYLNGQSLSFSVTTNDGQTRVFNNIVPSNWQFGQTYAASAKLQFT 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 286845 287815 + Conep20aG0006100.1 Cone20ag0059 459963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0059 259 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 Gene3D - 17 158 IPR036908 -
Cone20ag0059 259 SMART dpbb_1 65 153 IPR007112 -
Cone20ag0059 259 Gene3D - 161 258 IPR036749 -
Cone20ag0059 259 SUPERFAMILY Barwin-like endoglucanases 18 181 IPR036908 -
Cone20ag0059 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cone20ag0059 259 FunFam Expansin 163 256 - -
Cone20ag0059 259 SUPERFAMILY PHL pollen allergen 160 251 IPR036749 -
Cone20ag0059 259 PANTHER EXPANSIN-A15 22 252 IPR002963 GO:0009664(InterPro)
Cone20ag0059 259 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cone20ag0059 259 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cone20ag0059 259 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cone20ag0059 259 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cone20ag0059 259 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cone20ag0059 259 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cone20ag0059 259 FunFam Expansin 20 159 - -
Cone20ag0059 259 CDD DPBB_EXPA_N 30 158 - -
Cone20ag0059 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cone20ag0059 259 Pfam Lytic transglycolase 65 153 IPR009009 -
Cone20ag0059 259 Pfam Expansin C-terminal domain 164 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0059 Cone-Chr20:286845 Cone5ag0142 Cone-Chr5:611803 3.85E-115 dispersed
Cone17ag1424 Cone-Chr17:9750694 Cone20ag0059 Cone-Chr20:286845 1.30E-188 wgd
Cone20ag0059 Cone-Chr20:286845 Cone4ag1994 Cone-Chr4:13949158 5.58E-141 wgd
Cone20ag0059 Cone-Chr20:286845 Cone7ag1908 Cone-Chr7:12234001 8.70E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0059 - - - 0.0