Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0060 ATGGCTAAGGCTACCGATTCATCTTCGAATCATCGTCCGACGGTTGGTTCTGGTTTTTCCGGCGAAAACAGCAAAAGCAGCCCGAAATCCCGTCGGAGTAATCTGACTTCTCCATGGGCTCAAGTCGTCAGAGGCGAGCCCGAAGCGTCTGCTCGTCATTCTCCTCCATCTTCTTCTTCATCATCGATGTCTTCTCCAGCGGTCTCCCTACCGGAGCAAAATCCTTCTTTGGATTGCTCCCCTTCAATGACGAGACTTTCATCCCCGCCGCTTCAGCAGCCAGATACTCTGACTGAAAGCTCCGATCCTAGTAACGGCTATGCAGCGGTTCAGCCCAAGCAGTCGGCTTGGAACAAGTCCTCAAACGGCATCATTGAGGTAAGTCCTGAAATAGATGTGGTCTCTTGGCCTCCATTATCTGAGTCTGCTAGGGCTTCGCCTAAATTACCTTCAGTTTCTCCGAAGCTTGCTACCGATGGATCAGCCTCCACACCTCAGGTTCAGGGTCCTGCTAATGCACATTCTTCTCAGAAACAAGCTAGCATTGACACTAAATCTAATTCTTCATCGAACCACACAATGCCAACTCGACCAAGACCAACAAGGCGCGGTGGCAGTAATGGCAGCGGGGCAGCACGTGGTATCTTTGCTCATCATTCCACCCCATCTCAACCTCCCTTTCCTCCTGTATTCCCTATACCTCTCAATAGCTTTGGCAGTCCAGCTCCAGCTCCAGTCGTGCCAGATCCTTCTCTTAGGGAGACTCACTTTCTGAATGATAGTAATTGGGATAACAGAGCAGCAGCTGGAGCTTTCATGCCTCAACCACAACCCCGTCCAGTCAATGATCACCACAATTCCCAGCAGCGAAGAGGACACTTTGGGTCCCACCCACGTGGAGATGGTTCTTATCACCACAGCAATTATAGGGGGGGAAGGCGTGATCAGGATCGTGGTGGCAATTATGGGAGTGTTAGAGATGCTCAGATGCAGCAACAAAGACCCCCTCCTAGGGGTTTCGTGAGGCCTCCGCCTCCACCTTTTGCAGCTTCTTTTGCCCATCCTCAGCTTGGGGGGGCATTTGTTAATCCTATGGGTTTTCATGAGTTTATGTATGTTCCTGCCATGTCTTTTGAGCCCTACAGGGATATGCCGTTTATTGCACCTCCTCCACCTCCTCCTGTGTTCTTTCCCCCTGCTGATCCTAATTTTCCAGCTTTGATTGTTAAGCAAATGGATTATTATTTCAGTAATGGTAATTTGGTAAAAGACTCTTTTTTAAGGCAGTTGATGGATGATCAGGGCTGGGTTGAAATTTCTAATGTAGCAGAATTCCCTCGAGTAAGTTAA 1350 49.26 MAKATDSSSNHRPTVGSGFSGENSKSSPKSRRSNLTSPWAQVVRGEPEASARHSPPSSSSSSMSSPAVSLPEQNPSLDCSPSMTRLSSPPLQQPDTLTESSDPSNGYAAVQPKQSAWNKSSNGIIEVSPEIDVVSWPPLSESARASPKLPSVSPKLATDGSASTPQVQGPANAHSSQKQASIDTKSNSSSNHTMPTRPRPTRRGGSNGSGAARGIFAHHSTPSQPPFPPVFPIPLNSFGSPAPAPVVPDPSLRETHFLNDSNWDNRAAAGAFMPQPQPRPVNDHHNSQQRRGHFGSHPRGDGSYHHSNYRGGRRDQDRGGNYGSVRDAQMQQQRPPPRGFVRPPPPPFAASFAHPQLGGAFVNPMGFHEFMYVPAMSFEPYRDMPFIAPPPPPPVFFPPADPNFPALIVKQMDYYFSNGNLVKDSFLRQLMDDQGWVEISNVAEFPRVS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 288760 290999 + Conep20aG0006200.1 Cone20ag0060 459964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0060 449 MobiDBLite consensus disorder prediction 284 321 - -
Cone20ag0060 449 MobiDBLite consensus disorder prediction 1 234 - -
Cone20ag0060 449 MobiDBLite consensus disorder prediction 270 349 - -
Cone20ag0060 449 MobiDBLite consensus disorder prediction 156 203 - -
Cone20ag0060 449 SUPERFAMILY Winged helix DNA-binding domain 395 448 IPR036390 -
Cone20ag0060 449 PANTHER LUPUS LA PROTEIN-RELATED 161 448 IPR045180 GO:0003723(PANTHER)
Cone20ag0060 449 Pfam La domain 408 448 IPR006630 -
Cone20ag0060 449 CDD LAM 408 448 - -
Cone20ag0060 449 Gene3D - 401 449 IPR036388 -
Cone20ag0060 449 ProSiteProfiles La-type HTH domain profile. 398 449 IPR006630 -
Cone20ag0060 449 MobiDBLite consensus disorder prediction 52 125 - -
Cone20ag0060 449 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0060 K18757 - - mdm:103423449 298.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0060 Cone-Chr20:288760 Cone5ag1428 Cone-Chr5:9063150 1.32E-10 dispersed
Cone17ag1422 Cone-Chr17:9741583 Cone20ag0060 Cone-Chr20:288760 3.02E-247 wgd
Cone20ag0060 Cone-Chr20:288760 Cone4ag1997 Cone-Chr4:13955489 1.52E-70 wgd
Cone20ag0060 Cone-Chr20:288760 Cone7ag1906 Cone-Chr7:12214154 5.42E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030125 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2