Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0063 ATGTTTTGGCGCCAAACTCAGGGTGGTCTGACTAAGCTGATTCCAGCCAATGAGACGGTGCCGGGTTTGATCATATTTGGAGACTCCATCGTCGACACTGGCAACAATAACTACATCACAACTCTGGTTAAGGCCAATTTTCCTCCCTACGGTCGGGATCTCAATGCCGGAATCCCCACCGGAAGATTTTCGAACGGAAAGATCCTGTCCGATTTCCTAGCTGAAGAATTGGGAATTAAAGAGTTATTGCCACCGTATAAGGATCCAACTCTACAGCTCAGTGATCTCCTTACTGGAGTTACTTTTGCTTCAGCTTCTTCAGGATATGATCCTTTAACCTCACAAACTGCTGTACTCGTAGCAGGCAGCAACGACATAGCCAATACCTATTATACACTCCATCTTAGAAGCTTGCACTATGACATCTCTTCTTACACTGACCACATGCTTAACTTAGCCTCTGCTCTTGTCAAGGATCTGTACGGACTCGGCGTAAGAAGAATCAGTGTGTTTAACGTTCCATCACTTGGATGCATTCCATGCCAACGAACGTTGAACGGAGGTGTTCGAAGAGAGTGTTCGGAGAAAGTGAATGATGCGGCGAACTTGTTCAATTCCAAACTACATTCCGAGTTGAATTCTGTACAAACCGATCTGCCTAATGCAAGGCTGGTCTATGTCGACCTCTATCAACCCCTTCTTGACATAATAGAAAACCCAACAACATACGGGTTTGACGTGGTGAACAAAGGGTGTTGTGGTAGTGGGAATTTCGAGGTATCGATACTATGCAGCAAATGGGATCATCGCACGTGTAGAAATGACTCTAGTTATGTGTTTTGGGATAGTTATCACCCCACTGAAAAGGCATATAAGATCATTGCTTCTAAGCTCTTACAACATTAA 906 44.48 MFWRQTQGGLTKLIPANETVPGLIIFGDSIVDTGNNNYITTLVKANFPPYGRDLNAGIPTGRFSNGKILSDFLAEELGIKELLPPYKDPTLQLSDLLTGVTFASASSGYDPLTSQTAVLVAGSNDIANTYYTLHLRSLHYDISSYTDHMLNLASALVKDLYGLGVRRISVFNVPSLGCIPCQRTLNGGVRRECSEKVNDAANLFNSKLHSELNSVQTDLPNARLVYVDLYQPLLDIIENPTTYGFDVVNKGCCGSGNFEVSILCSKWDHRTCRNDSSYVFWDSYHPTEKAYKIIASKLLQH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 300786 302127 - Conep20aG0006500.1 Cone20ag0063 459967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0063 301 Pfam GDSL-like Lipase/Acylhydrolase 24 297 IPR001087 GO:0016788(InterPro)
Cone20ag0063 301 CDD SGNH_plant_lipase_like 21 300 IPR035669 -
Cone20ag0063 301 Gene3D SGNH hydrolase 11 301 IPR036514 -
Cone20ag0063 301 PANTHER GDSL ESTERASE/LIPASE EXL3 117 298 IPR050592 GO:0005576(PANTHER)
Cone20ag0063 301 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 23 34 IPR008265 GO:0006629(InterPro)|GO:0016298(InterPro)
Cone20ag0063 301 FunFam GDSL esterase/lipase APG 114 301 - -
Cone20ag0063 301 SUPERFAMILY SGNH hydrolase 24 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0063 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0830 Cone-Chr12:7515825 Cone20ag0063 Cone-Chr20:300786 7.24E-117 dispersed
Cone20ag0063 Cone-Chr20:300786 Cone7ag1904 Cone-Chr7:12207104 1.98E-117 dispersed
Cone20ag0062 Cone-Chr20:295814 Cone20ag0063 Cone-Chr20:300786 9.27E-101 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1156 Blo01g01609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1904 . Cone20ag0063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001408 2 2 3 2 2 2 3 1 2 2 1 3 2 2 2 2 2 5 3 1 2 4 4 2 3 1 2 2 2 7 73