Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0065 ATGAGTGCGTCCAGGTTTATTAAGTGCGTGACCGTCGGTGATGGTGCCGTCGGGAAAACCTGCATGTTGATTTCATATACCAGCAATACCTTCCCCACGGATTATGTGCCGACTGTTTTCGACAATTTTAGTGCCAATGTGGTTGTGGATGGAAGTACAGTCAACCTGGGCTTATGGGATACTGCTGGTCAGGAGGACTATAACAGATTAAGACCGTTGAGCTATCGAGGTGCTGATGTTTTTATACTTGCTTTCTCTCTCATAAGCAAGGCTAGCTATGAAAATGTAGCGAAGAAGTGGATTCCTGAACTGAAACATTATGCACCTGGTGTTCCAATCATTCTTGTTGGAACCAAGCTTGATCTCAGGGATGACAATCAGTTCTTCATAGACCATCCTGGTTCAGTGCCTATATCTACGGCTCAGGGCGAGGAACTGAAAAAACTAATTGGAGCTCCTGCCTATATCGAATGTAGTTCAAAAACCCAGCAGAATGTGAAGGGTGTTTTTGATGCAGCCATTAAGGTGGTACTCCAACCACCAAAATCGAAGAAGAAGAAACATAAGTCCCAAAAGGGTTGCTCCATATTATGA 594 44.11 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPIILVGTKLDLRDDNQFFIDHPGSVPISTAQGEELKKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQPPKSKKKKHKSQKGCSIL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 310857 313399 - Conep20aG0006700.1 Cone20ag0065 459969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0065 197 SMART rab_sub_5 7 180 - -
Cone20ag0065 197 CDD Rop_like 6 178 - -
Cone20ag0065 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Cone20ag0065 197 SMART ras_sub_4 4 180 - -
Cone20ag0065 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone20ag0065 197 Gene3D - 5 192 IPR027417 -
Cone20ag0065 197 Pfam Ras family 8 178 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone20ag0065 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone20ag0065 197 PANTHER RHO FAMILY GTPASE 5 191 IPR003578 GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005856(PANTHER)|GO:0007163(PANTHER)|GO:0007264(InterPro)|GO:0008360(PANTHER)|GO:0019901(PANTHER)|GO:0030865(PANTHER)|GO:0031410(PANTHER)|GO:0032956(PANTHER)|GO:0042995(PANTHER)
Cone20ag0065 197 FunFam rac-like GTP-binding protein RHO1 5 192 - -
Cone20ag0065 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Cone20ag0065 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Cone20ag0065 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Cone20ag0065 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Cone20ag0065 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Cone20ag0065 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Cone20ag0065 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Cone20ag0065 197 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0065 K04392 - - csv:101218715 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0132 Cone-Chr19:719972 Cone20ag0065 Cone-Chr20:310857 4.26E-112 dispersed
Cone20ag0065 Cone-Chr20:310857 Cone3ag1317 Cone-Chr3:32090616 2.49E-119 dispersed
Cone12ag0826 Cone-Chr12:7498383 Cone20ag0065 Cone-Chr20:310857 4.76E-133 wgd
Cone17ag1418 Cone-Chr17:9726865 Cone20ag0065 Cone-Chr20:310857 2.38E-142 wgd
Cone20ag0065 Cone-Chr20:310857 Cone4ag2004 Cone-Chr4:13981446 7.20E-126 wgd
Cone20ag0065 Cone-Chr20:310857 Cone7ag1901 Cone-Chr7:12185778 1.36E-130 wgd
Cone20ag0065 Cone-Chr20:310857 Cone8ag0862 Cone-Chr8:8523859 2.02E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272