Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0067 ATGGGTATTTTGAGCTCTTTACTGGGTGTTTGTGGGTTTGGGATGGGTACTTCAATTGGGCTTGCAATTGGGTACTACATGTTTATATATTTCCAGCCTACTGATGTCAAGGATCCCGAGGTCCGACCTTTAGTCGAAAGAGACTCAAAGATGTTGCAAGCTTTAATGCCGGAAATACCTCTCTGGGTCAAAAACCCTGATTATGATCGTGTTGATTGGCTTAACAAATTTGTTGGAGATATGTGGCCATACCTTAACAAGGCGATTTGCAAGATGGCTAAGACTATAGCAAAGCCTATTATTGCCGAGCAGATTCCAAAGTACAAAATCGATTCTGTTGAATTTGAAACACTTACTTTGGGCTCCTTACCTCCCACTTTTCAAGGAATGAAAGTTTATACAACTGATGACAAGGAGCTGATAATGGAGATGTCAATGAAGTGGGCAGGAAATCCAAACATCATCATTGCAGCTAAGGCCTTTGGATTAAAAGCCACAGTTCAAGTGGTTGATTTGCAAGTATTTGCCATTCCTCGTATAACTCTGAAGCCTTTGGTTCCTACATTTCCTTGTTTCGCCAAAATATTTGTCTCTCTCATGGAAAAGCCACATGTTGATTTTGGATTGAAATTGCTTGGAGCAGATGCCATGGCAATTCCTGGGCTCTATAGGTTTGTTCAGGAGCTAATTAAAGACCAAGTTGCGAATATGTATCTATGGCCTATGGCACTAGAAATCCCGATAATGGATCCTTCAAAAGGCATGAGAAAACCAGTTGGGATTCTACATGTTAAGGTTCTACGGGCGGTGAAGCTTAAAAAGAAAGATCTTTTTGGCGGATCGGATCCATATGTGAAATTTAAACTCTCTGAAGACAAGCTTCCTTCAAAGAAAACAACTGTAAAACATAACAACTTAAATCCGGAATGGAATGAAGAATTCAATTTGGCTGTTAAAGATCCACAATCTCAAGCCTTAGAACTCGTTATGTATGATTGGGAGCAGGTGGGTAAACCTGACAAGATGGGTATGAACGTAATTCCTTTAAAAGAGCTTACCCCAGACGAGTCCAAAGTCTTTACTCTTGATCTTTTGAAAAACATGGACCCAAATGATGTTCAAAATGAGAAGCCAAGAGGGCAGCTTGTTGTTGAACTATTGTACAAACCATTTAAGGAAGATGAAGTACCAAAAGACATAGAAGATTCCGAGACGGTTCAGGAGGCTCCAGAAGGAACACCAGCTGGCGGTGGTTTATTGGCTGTCATTGTCCATGAAGCTGAAGACGTGGAAGGAAAGCACCACACGAATCCTTATGTTCGTATACTCTTCAGAGGGGAGGAGAGAAAAACCAAGACTGTTAAAAAAAATCGGGACCCGAGATGGGACGAGGAATTTCAGTTTATGTTGGAGGAGCCGCCTATTAGAGAGAAGATTCACGTGGAAGTAATTAGTGCCGCCTCAAGGATGGGCATACTTCATCCGAAGGAAACTTTGGGTTATGCGGAGATAAATCTATCTGATGTTGTTGCAAACAAGAGAATCAATGGGAAGTATAATCTGATTGACTCGAAGAACGGCCGCGTTCAAGTTGAGCTGCAATGGAGAACTTCTTCTTAG 1620 41.48 MGILSSLLGVCGFGMGTSIGLAIGYYMFIYFQPTDVKDPEVRPLVERDSKMLQALMPEIPLWVKNPDYDRVDWLNKFVGDMWPYLNKAICKMAKTIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYTTDDKELIMEMSMKWAGNPNIIIAAKAFGLKATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLLGADAMAIPGLYRFVQELIKDQVANMYLWPMALEIPIMDPSKGMRKPVGILHVKVLRAVKLKKKDLFGGSDPYVKFKLSEDKLPSKKTTVKHNNLNPEWNEEFNLAVKDPQSQALELVMYDWEQVGKPDKMGMNVIPLKELTPDESKVFTLDLLKNMDPNDVQNEKPRGQLVVELLYKPFKEDEVPKDIEDSETVQEAPEGTPAGGGLLAVIVHEAEDVEGKHHTNPYVRILFRGEERKTKTVKKNRDPRWDEEFQFMLEEPPIREKIHVEVISAASRMGILHPKETLGYAEINLSDVVANKRINGKYNLIDSKNGRVQVELQWRTSS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 322077 325207 + Conep20aG0006900.1 Cone20ag0067 459971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0067 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Cone20ag0067 539 CDD SMP_SYT 60 248 - -
Cone20ag0067 539 CDD C2 262 364 - -
Cone20ag0067 539 PRINTS C2 domain signature 277 289 IPR000008 -
Cone20ag0067 539 PRINTS C2 domain signature 326 334 IPR000008 -
Cone20ag0067 539 PRINTS C2 domain signature 304 317 IPR000008 -
Cone20ag0067 539 Pfam C2 domain 419 521 IPR000008 -
Cone20ag0067 539 Pfam C2 domain 260 359 IPR000008 -
Cone20ag0067 539 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Cone20ag0067 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 2 537 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Cone20ag0067 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Cone20ag0067 539 SMART C2_3c 261 361 IPR000008 -
Cone20ag0067 539 SMART C2_3c 419 518 IPR000008 -
Cone20ag0067 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Cone20ag0067 539 FunFam Extended synaptotagmin-2 419 537 - -
Cone20ag0067 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289(InterPro)
Cone20ag0067 539 FunFam Synaptotagmin-2 isoform A 255 410 - -
Cone20ag0067 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 392 IPR035892 -
Cone20ag0067 539 Gene3D C2 domain 256 413 IPR035892 -
Cone20ag0067 539 Gene3D C2 domain 419 538 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0067 K28063 - - vvi:100260940 936.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0067 Cone-Chr20:322077 Cone5ag0345 Cone-Chr5:1471445 1.25E-223 dispersed
Cone12ag1230 Cone-Chr12:9541489 Cone20ag0067 Cone-Chr20:322077 4.65e-314 wgd
Cone17ag1416 Cone-Chr17:9717503 Cone20ag0067 Cone-Chr20:322077 0 wgd
Cone20ag0067 Cone-Chr20:322077 Cone8ag1282 Cone-Chr8:10561172 9.37e-314 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96