Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0072 ATGGCGAAACTTACTTCCCAAATCGCGTTTTCACTAACGCTGTTTCTACTGGCTTCAGTAGTATTCTCAACCACCTTCACGATATCGAACAAATGCGATCACACGGTGTGGCCTGGAATCTTGTCAAACGCAGGTGTAGCTACACTTTCCCCCACCGGATTCGCTCTGCAAAGCGGCGAGTCCAAGACAATCTCCGCGCCGACTTCTTGGGGAGGTCGTTTTTGGGGAAGAACCAATTGTTCTCAGGGCTCCACCGGAAAGTTCACGTGCGTCACCGGTGATTGTGGCTCCAACAAGCTCGAATGCGCCGGTAGTGGGGCCACGCCGCCAGCTACTCTAGCCGAGTTTACTCTAGACGGTTCCGGTGGCCTTGATTTCTTCGATGTCAGTTTAGTCGACGGTTACAACCTCCCGATGCTGGTAGTTCCACAGGGCGGAACGGGACAGAACTGTACGAGTACCGGTTGCGTGGTGAATCTGAACGGCGCCTGTCCGACTGAGCTGAAGATGACAAGCGTGGATGGTGAAGAAGTCGTGGCTTGCAAGAGCGCCTGCGAGGCTTTTAGTGAGCCAAAGTACTGCTGCAGCGGCGCTTATGCTACGCCGGACACTTGCAAGCCGTCTTCCTACTCTCAGCTGTTTAAGAACGCGTGCCCACGCGCTTACAGTTACGCCTATGATGATAAGACCAGCACTTTCACCTGTGCCGCTGCTGATTATGCTATCACTTTCTGCCCCGCCCCTAACACCAGTCTGAAATCGACAGATGGGGACAACACCGGGTCCTCCAGTTCGGCAATCAGTGGGACCATGATCTACGAAGGTGCTGCAATAGAGAAAAGTGCCACGTCATCTTCAACGTCTAACCGCCTTGTTAAGTTCTATGCCGGTTTCGCAGTTAGCGTCGCGGTGACAATATTCCGGTTCTCCCACGGACTGTGA 942 53.61 MAKLTSQIAFSLTLFLLASVVFSTTFTISNKCDHTVWPGILSNAGVATLSPTGFALQSGESKTISAPTSWGGRFWGRTNCSQGSTGKFTCVTGDCGSNKLECAGSGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMLVVPQGGTGQNCTSTGCVVNLNGACPTELKMTSVDGEEVVACKSACEAFSEPKYCCSGAYATPDTCKPSSYSQLFKNACPRAYSYAYDDKTSTFTCAAADYAITFCPAPNTSLKSTDGDNTGSSSSAISGTMIYEGAAIEKSATSSSTSNRLVKFYAGFAVSVAVTIFRFSHGL 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 349185 350747 - Conep20aG0007400.1 Cone20ag0072 459976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0072 313 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cone20ag0072 313 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cone20ag0072 313 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cone20ag0072 313 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cone20ag0072 313 Pfam Thaumatin family 30 246 IPR001938 -
Cone20ag0072 313 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Cone20ag0072 313 SMART tha2 26 246 IPR001938 -
Cone20ag0072 313 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Cone20ag0072 313 PANTHER OS03G0233200 PROTEIN 14 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cone20ag0072 313 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Cone20ag0072 313 Gene3D Thaumatin 24 246 IPR037176 -
Cone20ag0072 313 PIRSF PR5 1 288 IPR001938 -
Cone20ag0072 313 CDD TLP-PA 25 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0072 Cone-Chr20:349185 Cone3ag1190 Cone-Chr3:30563508 9.76E-116 dispersed
Cone17ag1410 Cone-Chr17:9689129 Cone20ag0072 Cone-Chr20:349185 3.98E-170 wgd
Cone20ag0072 Cone-Chr20:349185 Cone4ag1978 Cone-Chr4:13879218 8.50E-151 wgd
Cone20ag0072 Cone-Chr20:349185 Cone6ag1687 Cone-Chr6:12785740 2.68E-20 wgd
Cone20ag0072 Cone-Chr20:349185 Cone7ag1896 Cone-Chr7:12165863 8.90E-74 wgd
Cone20ag0072 Cone-Chr20:349185 Cone8ag0854 Cone-Chr8:8476467 1.23E-119 wgd
Cone20ag0072 Cone-Chr20:349185 Cone9ag1608 Cone-Chr9:11503598 2.79E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0072 - - - 0.0