Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0073 ATGTTCGCCGCACCATCATCTCTTTCTTCCTTATCAGCTCAATCCGTTGGGCTAGCATTTGCAATCGAAGGTCCTCCTTCGTCGGCGATTAAGTACGTCTCGTTCCGCCGTTTAACCGTATCAGCAGCTGCCTCCTGCGCATCAACCTCTGAGAAAGCAAGTCTCCACTTGGCATCGTCTTCCCCGTCGTCTGAGTCGCTCTACGAAGTGCTTGGCGTTCGGATGGGCGCCACGTCGAGAGAGATCAAGGCTGCTTACCGTAGATTAGCGCTGGTTCTGCATCCAGATGCTGTAGTATCTGACAGTCAACGGGGTCAAAGTCAAACTTCTGGGATTGCGTTCATGAAGGTGCATGATGCTTATGAGACTCTATCAGATCCCGTAAAGCGAGCTGGGTATGATCGGACATTGCTCTGGAGACAAAGCTCAGTTAAGACGTCGCCTTTTTCAACGACGTCAGCTCCCGGGTTTTGTACTGGATATACGCCTCGTAGAACATGGGAAACTGATCAATGCTGTATGTAG 525 50.86 MFAAPSSLSSLSAQSVGLAFAIEGPPSSAIKYVSFRRLTVSAAASCASTSEKASLHLASSSPSSESLYEVLGVRMGATSREIKAAYRRLALVLHPDAVVSDSQRGQSQTSGIAFMKVHDAYETLSDPVKRAGYDRTLLWRQSSVKTSPFSTTSAPGFCTGYTPRRTWETDQCCM 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 351980 352621 - Conep20aG0007500.1 Cone20ag0073 459977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0073 174 CDD DnaJ 68 126 IPR001623 -
Cone20ag0073 174 ProSiteProfiles dnaJ domain profile. 66 137 IPR001623 -
Cone20ag0073 174 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cone20ag0073 174 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cone20ag0073 174 PRINTS DnaJ domain signature 109 129 IPR001623 -
Cone20ag0073 174 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Cone20ag0073 174 Pfam DnaJ domain 67 134 IPR001623 -
Cone20ag0073 174 Gene3D DnaJ domain 58 141 IPR036869 -
Cone20ag0073 174 SMART dnaj_3 65 129 IPR001623 -
Cone20ag0073 174 SUPERFAMILY Chaperone J-domain 61 137 IPR036869 -
Cone20ag0073 174 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 39 172 IPR052276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0073 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0073 Cone-Chr20:351980 Cone13ag0986 Cone-Chr13:8351183 1.01E-08 dispersed
Cone20ag0073 Cone-Chr20:351980 Cone8ag0852 Cone-Chr8:8468277 8.27E-26 wgd
Cone20ag0073 Cone-Chr20:351980 Cone9ag1605 Cone-Chr9:11489957 3.07E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004491 1 1 1 1 0 2 2 2 1 1 2 2 0 1 1 1 2 3 1 2 1 1 2 1 2 1 2 1 1 1 40