Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0092 ATGGCCGTTGCTATACTTGGGGGCGTAATGAGAAAGGCCAACTGGGTCAGGGAGATACCATCCAGCGTGATAGGCCCACGGTACAAAGTTGTTAGAGCTGGGACAGGGAAGAACCATACGGTGGTGGTTACTGAGGATGGGAATTCACTATCGTTTGGATGGAACAAACATGGGCAATTGGGTTCTGGTTCAGTTAAAAATGAAATCGAATCATCGCCAGTTTCTTGTCTTGTCTCTGAAGTAAAAAATGTTGCTTGTGGGGCTGAATTTACTGTGTGGCTGTCTTCCATTGAAGGATCTTCTATACTAACTGCAGGTCTGCCACAATATGGGCAACTTGGGCATGGAACAGACAATGAGTACAACACTAAAGATAGCTCGGTGAGACTTGCTTATGAAGCCCAACCACGTCCCAAAGCAATAGCTTCTCTTGCTGGAGAAACCATAGTCAAAGTTGCATGTGGTTCAAACCATACAGTGGCGGTGGATTCAAATGGCTTTGTCTATACGTGGGGTTTCGGCGGTTATGGAAGACTAGGACATAGAGAGCAAAAGGATGAGTGGGCCCCTCGTCATGTTGATGTCTTTCAAAGGCATAACACTCTACCTCCAGATGCTGTTGTTTCAGCTGGCTCTGTAAACTCTGCATGTACTGCAGGTGGAGGCCAGTTGTATATGTGGGGAAAGATAAAGTCTACAGGTGATGACTGGATGTATCCTAAACCTCTTATGGATTTAAGTGGCTGGAATCTACGTTGTATGGATTCAGGTAGTATGCACCACTTTGTTGGTGCAGACAACTCCTGCATCAGCTGGGGCCATGCTCAGTATGGAGAACTGGGATATGGTCCATTAGGACAGAAGTCATCTGCAGTTCCCAAAAAGGTTGACATTCTTGAGGGGATGCATGTTATTGGTGTTGCATGCGGCGTTGGCCATTCAATGGTTATAGTTGATAGAACTAATATTCATGAACGGCTTGATCAGCTTGATGTATTTGATGGCAGTGCCACTGTTGAAGTATTCGTGGAACCTCAGAGTAAAACCCCAGCTTCGAAGAAAGCTATTGCCAAAAAGGGCTCTATTAAGGCTTCTAGTAACTCCAAGAAAAGGAAGACATCAAAAGCTTCGTCCGAATCAGAAGAAGAGGTAGAGGACGATGATGAAGATAGTGATGACAGTGAAGAACAGGTCAATGGCCTCCCTGGACGAAAAGGTCAACGAGGAGGGAAGGCTTCTACCCGAGGAGGATGCCACACTGCAAGTAAAAGTCAGAACTCCTCACAAGGTAAAACGGGTAAGAGAGGAAGGCCAAGAAAGTCATAA 1326 45.85 MAVAILGGVMRKANWVREIPSSVIGPRYKVVRAGTGKNHTVVVTEDGNSLSFGWNKHGQLGSGSVKNEIESSPVSCLVSEVKNVACGAEFTVWLSSIEGSSILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPKAIASLAGETIVKVACGSNHTVAVDSNGFVYTWGFGGYGRLGHREQKDEWAPRHVDVFQRHNTLPPDAVVSAGSVNSACTAGGGQLYMWGKIKSTGDDWMYPKPLMDLSGWNLRCMDSGSMHHFVGADNSCISWGHAQYGELGYGPLGQKSSAVPKKVDILEGMHVIGVACGVGHSMVIVDRTNIHERLDQLDVFDGSATVEVFVEPQSKTPASKKAIAKKGSIKASSNSKKRKTSKASSESEEEVEDDDEDSDDSEEQVNGLPGRKGQRGGKASTRGGCHTASKSQNSSQGKTGKRGRPRKS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 421203 425422 - Conep20aG0009500.1 Cone20ag0092 459996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0092 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 152 162 IPR000408 -
Cone20ag0092 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 47 97 IPR000408 -
Cone20ag0092 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 320 IPR000408 -
Cone20ag0092 441 Pfam Regulator of chromosome condensation (RCC1) repeat 103 162 IPR000408 -
Cone20ag0092 441 Pfam Regulator of chromosome condensation (RCC1) repeat 165 199 IPR000408 -
Cone20ag0092 441 Pfam Regulator of chromosome condensation (RCC1) repeat 268 317 IPR000408 -
Cone20ag0092 441 Pfam Regulator of chromosome condensation (RCC1) repeat 46 92 IPR000408 -
Cone20ag0092 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 33 43 IPR000408 -
Cone20ag0092 441 MobiDBLite consensus disorder prediction 380 396 - -
Cone20ag0092 441 PRINTS Chromosome condensation regulator RCC1 signature 152 168 IPR000408 -
Cone20ag0092 441 PRINTS Chromosome condensation regulator RCC1 signature 30 43 IPR000408 -
Cone20ag0092 441 PRINTS Chromosome condensation regulator RCC1 signature 49 65 IPR000408 -
Cone20ag0092 441 PRINTS Chromosome condensation regulator RCC1 signature 168 182 IPR000408 -
Cone20ag0092 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 166 221 IPR000408 -
Cone20ag0092 441 Gene3D - 9 337 IPR009091 -
Cone20ag0092 441 MobiDBLite consensus disorder prediction 417 432 - -
Cone20ag0092 441 SUPERFAMILY RCC1/BLIP-II 27 320 IPR009091 -
Cone20ag0092 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 307 317 IPR000408 -
Cone20ag0092 441 MobiDBLite consensus disorder prediction 348 441 - -
Cone20ag0092 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 100 165 IPR000408 -
Cone20ag0092 441 PANTHER PROTEIN RCC2 27 439 IPR028641 GO:0016020(PANTHER)|GO:0031267(PANTHER)|GO:0034260(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0092 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0092 Cone-Chr20:421203 Cone9ag0160 Cone-Chr9:704186 7.65E-18 dispersed
Cone17ag1389 Cone-Chr17:9611031 Cone20ag0092 Cone-Chr20:421203 3.23E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32