Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0093 ATGGAAGGAACTGGTGAAACTGGCAGTGCTGTGCAACGACTTCATTCTCCGTTCGGTCAAATGTCGTCGTCGTCAATGATTAAGCCACATAACCATTTGGATGTAGCTTCTGGTTTTACTGGCTCTCAAATTGGTGCCTTTCCGCGTCAATTATCCACAAATTTGAGTCCAGAGAACTGTAAGAGACCTGGAATTCCACCCTCACATCCCAATAATCCTTGTGCACTTCCCAATTCACAGATTGTGCCTTCTCCTCAGTCAACTTCTTGGCAACTCGGCTCGCATAGTTTGAGCCCAGGGGCTACTCATTCTCGGTCTTTATCTCAACCTGCGTTTTTCTCACTTGATAGCTTGCCTCCGTTGAGCCCCTCACCTTATCGCGAGCCTTCATCTTCACTTTCAGACCCGAGTTTGAAAGATGTTTCCATGGAAGATAGTGTAGTTAATTCTCATGCCCCTTCACAATTGCAGTTTAATGAAGGTCTTCCTCCAAGAAGAGGGCATAGGCGATCAAACAGTGATGTTCCGTTAGGGTTTTCTGCAATGATTCAATCGTCGCCTCAACTGCTTCCTATTGGAAGTTGGGGTAATTCAGACCGATCTGTATCAGGACAGGAGAACTTGGGGATGGAGAAGCCGGTTCAGTTGGTAATGAAGAATGGAGCAAATATGGACAAGGATGGGAACATAAATTGGGAAGATGAGAAGAAATCTGAGGTTGATATTGGAGATGATTTGTTTAGTGCATATATGAATCTTGACAGCATTGATAAGATGACTTCATCTGGTACTGAGGACAAGGATTTTGATAGCAGAGCTAGTGGGTCCAAGACAAATGGAGGTGAAAGCAGTGACAATGAAGTGGAAAGTGGTGTAAAAGCAAATTCAGGTTATGCAAATGAGAAGGAAGGAGGGAAGAGAAGGGCTGGTGAAGAGATTACACAGCCTGCAAGACACTATAGAAATGTTTCAATGGATAGTTATATGGACAGCTTGAACTTTTACAGTGAACCACCTAAGTTCCTGCCTTTGGGAACTCAAGTGAGTCAACAACATTCACCCAGCAATTCACTGGATGGCAACTTGAGTAGATTCAACATGGAGTTTGGAAATGGTGAGTTCAGTGGAGTTGAGCTGAAGAAGATCATGGAAAATGAGAAACTTGCTGAGATTGCCTTATCAGATCCTAAACGTGCCAAGAGGATTTTGGCTAATCGTCAATCAGCTGCACGGTCCAAAGAGCGGAAGATGCGGTACATTTCAGAATTAGAACACAAGGTGCAGACTCTGCAGACAGAAGCAACCACTTTGTCTGCCCAGCTGACAAAGTTACAGAGAGATTCTATGGGACTATCAAATGAGAACAATGAATTAAAATTCTGTGTTCAGGCCATGGAGCAAGAGGCCCAACTTAAAGACGCTCTGAATGAAGCTCTGACAGCAGAAGTCCAACGTCTAAAGCTGGTAGCCGCAGATTTAGGCAGGGAGGCTCACCTCTCAAGCCGCATGGCTCAGCAGCTCTCAATTAATCAACCCATGTTCCAACCCAACCACCCTGGTCTTTATCAGTTACGACAGCAGTTACCATCGCAGCCGGGAAACCTGCCAAACCATGAAATACAAACCAAGCAGCAGAACGGCGATGCAGCTAAGCCTGAGCCGAAGCAATAG 1671 45.18 MEGTGETGSAVQRLHSPFGQMSSSSMIKPHNHLDVASGFTGSQIGAFPRQLSTNLSPENCKRPGIPPSHPNNPCALPNSQIVPSPQSTSWQLGSHSLSPGATHSRSLSQPAFFSLDSLPPLSPSPYREPSSSLSDPSLKDVSMEDSVVNSHAPSQLQFNEGLPPRRGHRRSNSDVPLGFSAMIQSSPQLLPIGSWGNSDRSVSGQENLGMEKPVQLVMKNGANMDKDGNINWEDEKKSEVDIGDDLFSAYMNLDSIDKMTSSGTEDKDFDSRASGSKTNGGESSDNEVESGVKANSGYANEKEGGKRRAGEEITQPARHYRNVSMDSYMDSLNFYSEPPKFLPLGTQVSQQHSPSNSLDGNLSRFNMEFGNGEFSGVELKKIMENEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTKLQRDSMGLSNENNELKFCVQAMEQEAQLKDALNEALTAEVQRLKLVAADLGREAHLSSRMAQQLSINQPMFQPNHPGLYQLRQQLPSQPGNLPNHEIQTKQQNGDAAKPEPKQ 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 425791 428608 - Conep20aG0009600.1 Cone20ag0093 459997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0093 556 CDD bZIP_plant_RF2 398 447 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0093 556 MobiDBLite consensus disorder prediction 43 59 - -
Cone20ag0093 556 FunFam probable transcription factor PosF21 396 449 - -
Cone20ag0093 556 Coils Coil 462 496 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 1 176 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 512 549 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 190 205 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 127 157 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 512 556 - -
Cone20ag0093 556 Pfam bZIP transcription factor 397 454 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0093 556 Gene3D - 396 448 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 74 115 - -
Cone20ag0093 556 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 153 543 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone20ag0093 556 MobiDBLite consensus disorder prediction 9 30 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 190 211 - -
Cone20ag0093 556 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 395 458 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0093 556 SMART brlzneu 393 457 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0093 556 MobiDBLite consensus disorder prediction 274 293 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 300 315 - -
Cone20ag0093 556 Coils Coil 413 447 - -
Cone20ag0093 556 MobiDBLite consensus disorder prediction 258 318 - -
Cone20ag0093 556 SUPERFAMILY Leucine zipper domain 397 448 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0093 Cone-Chr20:425791 Cone20ag0385 Cone-Chr20:1803649 7.05E-40 dispersed
Cone12ag1197 Cone-Chr12:9407322 Cone20ag0093 Cone-Chr20:425791 5.45E-139 wgd
Cone17ag1388 Cone-Chr17:9607920 Cone20ag0093 Cone-Chr20:425791 0 wgd
Cone20ag0093 Cone-Chr20:425791 Cone8ag1245 Cone-Chr8:10426305 3.08E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45549 PF08711 Med26 4.10E-05 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0093 - - - 0.0