Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0095 | ATGTCGACGTTCAGTGGAGATGAAACGGCACCATTCTTTGGCTTCCTCGGAGCTGCGGCGGCGCTCGTCTTCTCCTGTATGGGAGCTGCATACGGTACGGCGAAGAGTGGAGTAGGTGTGGCGTCGATGGGAGTGATGCGACCGGAGCTGGTAATGAAGTCGATCGTTCCGGTAGTTATGGCTGGAGTGTTAGGTATTTACGGTCTGATCATAGCAGTCATCATCAGTACAGGGATTAACCCCAAGGCCAAATCCTATTACCTCTTTGATGGCTACGCGCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGACTTTCTGCTGGAATGGCTATCGGAATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTGTTTGTTGGGATGATTCTTATCCTCATTTTTGCAGAAGCGCTAGCTCTGTATGGCCTCATTGTCGGCATTATTCTCTCTTCCCGAGCCGGGCAGTCTAGAGCTGACTAA | 495 | 51.92 | MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 434877 | 436343 | + | Conep20aG0009900.1 | Cone20ag0095 | 459999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0095 | 164 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 12 | 79 | - | - | |
Cone20ag0095 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 29 | 53 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 106 | 132 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 133 | 156 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 55 | 79 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | Gene3D | - | 10 | 161 | IPR035921 | - | |
Cone20ag0095 | 164 | Pfam | ATP synthase subunit C | 96 | 154 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | Pfam | ATP synthase subunit C | 16 | 75 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 158 | - | GO:0016021(PANTHER) | |
Cone20ag0095 | 164 | SUPERFAMILY | F1F0 ATP synthase subunit C | 12 | 76 | IPR035921 | - | |
Cone20ag0095 | 164 | NCBIfam | V-type ATPase subunit C | 12 | 120 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0095 | 164 | FunFam | V-type proton ATPase proteolipid subunit | 10 | 161 | - | - | |
Cone20ag0095 | 164 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 88 | 155 | - | - | |
Cone20ag0095 | 164 | SUPERFAMILY | F1F0 ATP synthase subunit C | 86 | 155 | IPR035921 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0728 | Cone-Chr12:6685740 | Cone20ag0095 | Cone-Chr20:434877 | 2.43E-95 | dispersed | |
Cone20ag0095 | Cone-Chr20:434877 | Cone4ag1412 | Cone-Chr4:11305015 | 2.05E-93 | dispersed | |
Cone12ag1193 | Cone-Chr12:9395083 | Cone20ag0095 | Cone-Chr20:434877 | 6.18E-95 | wgd | |
Cone17ag1386 | Cone-Chr17:9600297 | Cone20ag0095 | Cone-Chr20:434877 | 1.20E-94 | wgd | |
Cone20ag0095 | Cone-Chr20:434877 | Cone8ag0837 | Cone-Chr8:8391216 | 1.67E-95 | wgd | |
Cone20ag0095 | Cone-Chr20:434877 | Cone8ag1241 | Cone-Chr8:10414340 | 5.98E-66 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0095 | K02155 | - | vvi:100252288 | 285.804 |