Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0095 ATGTCGACGTTCAGTGGAGATGAAACGGCACCATTCTTTGGCTTCCTCGGAGCTGCGGCGGCGCTCGTCTTCTCCTGTATGGGAGCTGCATACGGTACGGCGAAGAGTGGAGTAGGTGTGGCGTCGATGGGAGTGATGCGACCGGAGCTGGTAATGAAGTCGATCGTTCCGGTAGTTATGGCTGGAGTGTTAGGTATTTACGGTCTGATCATAGCAGTCATCATCAGTACAGGGATTAACCCCAAGGCCAAATCCTATTACCTCTTTGATGGCTACGCGCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGACTTTCTGCTGGAATGGCTATCGGAATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTGTTTGTTGGGATGATTCTTATCCTCATTTTTGCAGAAGCGCTAGCTCTGTATGGCCTCATTGTCGGCATTATTCTCTCTTCCCGAGCCGGGCAGTCTAGAGCTGACTAA 495 51.92 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 434877 436343 + Conep20aG0009900.1 Cone20ag0095 459999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0095 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Cone20ag0095 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 Gene3D - 10 161 IPR035921 -
Cone20ag0095 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 158 - GO:0016021(PANTHER)
Cone20ag0095 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Cone20ag0095 164 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0095 164 FunFam V-type proton ATPase proteolipid subunit 10 161 - -
Cone20ag0095 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Cone20ag0095 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0728 Cone-Chr12:6685740 Cone20ag0095 Cone-Chr20:434877 2.43E-95 dispersed
Cone20ag0095 Cone-Chr20:434877 Cone4ag1412 Cone-Chr4:11305015 2.05E-93 dispersed
Cone12ag1193 Cone-Chr12:9395083 Cone20ag0095 Cone-Chr20:434877 6.18E-95 wgd
Cone17ag1386 Cone-Chr17:9600297 Cone20ag0095 Cone-Chr20:434877 1.20E-94 wgd
Cone20ag0095 Cone-Chr20:434877 Cone8ag0837 Cone-Chr8:8391216 1.67E-95 wgd
Cone20ag0095 Cone-Chr20:434877 Cone8ag1241 Cone-Chr8:10414340 5.98E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0095 K02155 - vvi:100252288 285.804