Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0097 ATGGCAACGGTCACTTTCTTCTTCTTTACTGTCACATTCTTCGCAGCCATTGTTGCGACCTTAATGATACCGGCTGCGGAAAGCAGTAGCGATGTAACGTTGATGGAAATCAAAGCGTTGGAGTCTTTCAAGCTGAGTCTTCATGATCCACTCGGCGCGCTGGACAGCTGGGACTCGGCTTCTCCGTCCGCGCCTTGTGACTGGAGAGGTGTTTTCTGTTACAATAAAAGAGTTTGGGAGCTCCGTTTGCCGCGGCTCCAACTCGGTGGCAGACTCAGTGACCAACTCGGGGAGCTGCGTCAGCTCCATTGTCTGAGCCTCCATTCGAATTACTTCAATGGCTCTATACCTTCCTCTTTGCCGAAATGCGTTTTGCTTCGCGCCGTTTACTTGCACAATAACTCACTCTCCGGAAATCTCCCTCCGGAGATCTTCAACCTCACGAATCTTCAAATCCTCAACATCGCTAACAATGCTCTCTCTGGAAAAATATACGGCCGGTTCTTGCACAGTCTCCGTTTCCTCGATTTATCGTCAAATTCATTTTCCGGCGAAATACCGGACAACTTCTCATCCGGCTCTCAGCTCCAACTCGCCAACTTCTCGTTCAATCGATTCACAGGCCAGGTTCCGGCCACCATAGGAGAGCTTCAAAAGCTTCAGTATCTATCTCTGGACTCGAACCGTTTGTACGGAACTCTGCCTTCAGCCATAGCTAACTGTTCGTCGCTCCTCCATTTCAGCGCAGAAGATAACGCTCTGATAGGTCTGATTCCGGCCACCATTGGTGCTATTCCGAAGCTCGAAGTTCTGTCGCTTTCACGAAATAAACTCTCAGGATTGGTCCCCACCACACTGTTGTGCAGCGTTTCAGTCAATTTGTCGTCACTGAGAAGTTTTCTTGTGGGATTTAATGAGCTCACGAGAATTTCTGAGCCGCCAAACGGAAAATGTTTAAGTTCGTTAGAGAATTTCGACCTTAAAGAGAATCACATTCGAGGCGTGTTTCCATCTTGGCTAACAGAAATTACTACGTTGAGAACATTAGATCTTTCCGGAAACTTCTTCTCTGGCTCGATTCCGGTTCAAATCGGAAACCTCGTCAGCTTAGAGGAGCTAAGAATAGCTAATAATTCACTCACCGGAGAAGTTCCCAAGGAGATTGTGAACTGTAATTTGTTACAAGTTATTGACCTTGAAGGCAATCGATTTTCAGGTCAGATTCTTTCGTCTTTAGACGGACTAAGGAACCTGAAAATGTTATCTCTCGGAAGAAATTCTTTCTCCGGCTCGATTCCTTCAAGTTTCGGAAGTCTTTCCAGGCTTGAGTCATTGAACTTGAGCGAAAATAATTTAACCGGAATGATTCCGGAGGAGCTACTTAATCTAAGCAATCTGAGCTCTTTGAATATAGGTAGCAACAATTTTTCAGGGGCAGTTTTGTCAAATATTGGAGAATTGAAGAACATTCAGGTTTTGAATTTGAGTAATTGTGGATTGTCAGGAAAGATCCCTACTAGTATTGGAAGTTTGATGAAACTTTCTGCTCTGGATTTGAGTGCGCAGAATCTTTCGGGCGAGCTACCAATCGAGCTTTTCGGGTTGCCAAGTTTACAACTTGTTGATTTGGGAGAGAACAAGTTATCTGGAAATCTTCCCGAAGGTTTTAGCAGTTTAGTTGGCTTGCTTTATCTAAACCTTAGCTCGAATGGATTCACCGGAAATATTCCGGCAACGTATGGATATCTCCGATCGTTGGTCGTTCTATCTCTTTCGAAGAATCATATTTCTAGTGCGATACCACTAGAGCTTGGTGGTTGTTCTGATCTTGAAGTGCTTGAACTTAGATCAAATCGTTTGAAGGGAAGTATTCCACGTGAAATTTCTCACTTATCTCGTTTGAAAGAGCTTGATTTGGGTCAAAATAGATTAACAGGTGAAATCCCAAGAGAGATTTCGAAATGCGCTGCTCTTACTTCCCTGTTTTTGGACATGAATCACCTTTCCGGCCAAATACCAGATACATCGTCCAATTTGTCTAACCTTAAAGAGTTAAACCTTTCTTCAAATTCATTTACCGGACCCATCCCGGAAAATCTTGCTCATATTCCTGGTTTACGCCTCTTGAATTTGTCAAATAATGACCTCCAAGGAGAGATTCCGGAAGCATTGGGTAATCGATTCAACGATCCTTACATATTTGCAAGAAACAGTAGATTATGTGGGAAGCCATTGGGAAGAGAATGTCCAAGTGTAAGAAAGAGAGAAAGGATGAAGCTAATTATCATAATTGGTATAGCTCTAGGAGGTGTTTGTCTAATTGCATTGTTCTGTTGCGCTTATATTTACGGGCTCTTAAGATGGCGGAAGAGGCTTAGAGAAAGAGTAACAGGGGAGAAGAAGTCTACCCCAACAAGTACAGGCACGGGGGGAGGACGAGTAAGCAGAGAGAGCGGCGAAAATGGTGGTTCGAAATTAATTATGTTCAATAACAAGATTACATATGCAGAAGCATTAGAAGCAACAAGACAATTTGACGAGGAAAATGTCTTAAGCAGAGGAAAATTTGGACATGTGTTTAAGGCCTCGTTTAAAGACGGAATGGTGCTCGCTATTCGCCGCCTTCCTCATGGCGCTATTGATGAAGGTACTTTCCGGAAAGAAGCTGAAGAACTCGGAAAAGTCAAGCATCGAAATTTAACGGTTTTACGGGGGTATTATGCAGGCACACCGGATGTAAGGCTACTTGTCTATGACTACATGCCTAATGGGAACTTAGCTACACTTCTTCAAGAGGCATCTCATCAAGATGGTCATGTGCTCAATTGGCCAATGCGTCACCTAATTGCACTCGGAATAGCCCGTGGCCTTGCGTTCTTACACTCGGGATCAATGGTCCATGGTGATGTGAAGCCGCAAAATGTTCTTTTTGATGCAGATTTTGAAGCCCATTTGTCGGAATTTGGGCTGGACCGATTGATAGTTGCACAACGGCAGCAGCCCGAAGCATCTACATCGGCTACCCCCATCGGTACATTGGGCTATGTTTCGCAGGAAGTGGCATTATCGGGGCAGCCCACAAGAGAAGGCGATGTGTATAGTTTTGGGATTGTTTTGTTGGAGATATTAACGGGGAGGAAACCAGTTATGTTTAGAGAAGATGATGAAGATATAGTGAAGTGGGTGAAAAAGCAATTGCAAATGGGTCAAATTACGGAACTGTTGGAACCCGGGTTGCTCGAGTTAGACCCTGAATCGTCAGAGTGGGAGGAGTTCTTATTAGGAGTCAAAGTAGGCCTGCTCTGTACGACGCCTGATCCATTTGATAGACCATCAATGGCTGATATTGTATATATGCTTGAAGGTTGTAGGGTCGGGCCAGATATTCCGTCCTCAGCTGATCCCACCATGCTACACTCCCCTGCATGA 3429 44.53 MATVTFFFFTVTFFAAIVATLMIPAAESSSDVTLMEIKALESFKLSLHDPLGALDSWDSASPSAPCDWRGVFCYNKRVWELRLPRLQLGGRLSDQLGELRQLHCLSLHSNYFNGSIPSSLPKCVLLRAVYLHNNSLSGNLPPEIFNLTNLQILNIANNALSGKIYGRFLHSLRFLDLSSNSFSGEIPDNFSSGSQLQLANFSFNRFTGQVPATIGELQKLQYLSLDSNRLYGTLPSAIANCSSLLHFSAEDNALIGLIPATIGAIPKLEVLSLSRNKLSGLVPTTLLCSVSVNLSSLRSFLVGFNELTRISEPPNGKCLSSLENFDLKENHIRGVFPSWLTEITTLRTLDLSGNFFSGSIPVQIGNLVSLEELRIANNSLTGEVPKEIVNCNLLQVIDLEGNRFSGQILSSLDGLRNLKMLSLGRNSFSGSIPSSFGSLSRLESLNLSENNLTGMIPEELLNLSNLSSLNIGSNNFSGAVLSNIGELKNIQVLNLSNCGLSGKIPTSIGSLMKLSALDLSAQNLSGELPIELFGLPSLQLVDLGENKLSGNLPEGFSSLVGLLYLNLSSNGFTGNIPATYGYLRSLVVLSLSKNHISSAIPLELGGCSDLEVLELRSNRLKGSIPREISHLSRLKELDLGQNRLTGEIPREISKCAALTSLFLDMNHLSGQIPDTSSNLSNLKELNLSSNSFTGPIPENLAHIPGLRLLNLSNNDLQGEIPEALGNRFNDPYIFARNSRLCGKPLGRECPSVRKRERMKLIIIIGIALGGVCLIALFCCAYIYGLLRWRKRLRERVTGEKKSTPTSTGTGGGRVSRESGENGGSKLIMFNNKITYAEALEATRQFDEENVLSRGKFGHVFKASFKDGMVLAIRRLPHGAIDEGTFRKEAEELGKVKHRNLTVLRGYYAGTPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSGSMVHGDVKPQNVLFDADFEAHLSEFGLDRLIVAQRQQPEASTSATPIGTLGYVSQEVALSGQPTREGDVYSFGIVLLEILTGRKPVMFREDDEDIVKWVKKQLQMGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTTPDPFDRPSMADIVYMLEGCRVGPDIPSSADPTMLHSPA 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 440664 444092 - Conep20aG0010100.1 Cone20ag0097 460001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0097 1142 ProSiteProfiles Protein kinase domain profile. 845 1137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0097 1142 Gene3D Phosphorylase Kinase; domain 1 813 920 - -
Cone20ag0097 1142 SUPERFAMILY L domain-like 36 311 - -
Cone20ag0097 1142 Pfam Protein tyrosine and serine/threonine kinase 848 1071 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0097 1142 ProSiteProfiles Leucine-rich repeat profile. 441 462 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 FunFam Leucine-rich repeat receptor protein kinase EMS1 211 311 - -
Cone20ag0097 1142 SMART serkin_6 845 1120 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0097 1142 SUPERFAMILY Protein kinase-like (PK-like) 825 1130 IPR011009 -
Cone20ag0097 1142 FunFam Piriformospora indica-insensitive protein 2 362 458 - -
Cone20ag0097 1142 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 219 241 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 171 191 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 537 559 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 267 286 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 489 511 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 394 415 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine Rich Repeat 369 391 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 SUPERFAMILY L domain-like 486 725 - -
Cone20ag0097 1142 Gene3D Ribonuclease Inhibitor 168 311 IPR032675 -
Cone20ag0097 1142 SMART LRR_typ_2 367 391 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 99 123 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 265 288 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 487 511 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 535 558 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 679 702 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 703 727 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 415 438 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 294 318 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 583 607 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 439 463 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 631 655 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 217 241 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 319 342 IPR003591 -
Cone20ag0097 1142 SMART LRR_typ_2 169 193 IPR003591 -
Cone20ag0097 1142 Gene3D Ribonuclease Inhibitor 624 751 IPR032675 -
Cone20ag0097 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 921 1128 - -
Cone20ag0097 1142 Pfam Leucine rich repeat 658 716 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine rich repeat 584 644 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Pfam Leucine rich repeat 416 476 IPR001611 GO:0005515(InterPro)
Cone20ag0097 1142 Gene3D Ribonuclease Inhibitor 34 167 IPR032675 -
Cone20ag0097 1142 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 461 753 - -
Cone20ag0097 1142 Gene3D Ribonuclease Inhibitor 408 508 IPR032675 -
Cone20ag0097 1142 Gene3D Ribonuclease Inhibitor 312 407 IPR032675 -
Cone20ag0097 1142 SMART LRR_sd22_2 679 702 - -
Cone20ag0097 1142 SMART LRR_sd22_2 583 604 - -
Cone20ag0097 1142 SMART LRR_sd22_2 217 243 - -
Cone20ag0097 1142 SMART LRR_sd22_2 169 192 - -
Cone20ag0097 1142 SMART LRR_sd22_2 607 630 - -
Cone20ag0097 1142 SMART LRR_sd22_2 631 654 - -
Cone20ag0097 1142 ProSitePatterns Serine/Threonine protein kinases active-site signature. 965 977 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0097 1142 Gene3D Ribonuclease Inhibitor 509 623 IPR032675 -
Cone20ag0097 1142 MobiDBLite consensus disorder prediction 796 823 - -
Cone20ag0097 1142 Gene3D Transferase(Phosphotransferase) domain 1 921 1128 - -
Cone20ag0097 1142 FunFam Putative LRR receptor-like serine/threonine-protein kinase 810 920 - -
Cone20ag0097 1142 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 192 - -
Cone20ag0097 1142 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Cone20ag0097 1142 SUPERFAMILY RNI-like 234 549 - -
Cone20ag0097 1142 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 483 1122 IPR051564 GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0097 Cone-Chr20:440664 Cone15ag1304 Cone-Chr15:10182636 1.20E-56 dispersed
Cone17ag1384 Cone-Chr17:9591820 Cone20ag0097 Cone-Chr20:440664 0 wgd
Cone20ag0097 Cone-Chr20:440664 Cone6ag1671 Cone-Chr6:12702590 3.89E-170 wgd
Cone20ag0097 Cone-Chr20:440664 Cone9ag1593 Cone-Chr9:11419790 2.78E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82529 PF00314 Thaumatin 5.20E-85 CL0293 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0097 - - - 0.0