Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0103 ATGGGGAGGAAGAAGAAATTCTTCGACAAGAAGAAATCAGCTACTTTCCAGTTACACGCCCGTGACTCGTCGGATCCCGTTTACGAGGAAAACCCTGACGATGACCGAGTATTTGTCCGCGTCGACAACAATCCTTACACCTTGGCCGACGATAGCGCCTACCCCGACGCCGTTCACTCGGTATTCGCCGACGCACCTGAAGATCCTGACGGTGACGGGAACGATAACTGTGTTCTTGGAAACCCAGTCGGTGTTCAGGCTGTTAATGGTGGACCAGCCCCCTTGCCGGACCATGTTAGGAAAGAGATTATTGAGCTTGGGTTCCCAGATGATGGGTACAATTATTTACTTCATTTGAGGGAGATCAGAAATACGGGTGGTGGTTCCGCGTTTTATCAGAACCCTAAGGCCAAGCTTGATCAGCTACCCCTTGATGTAAAGGCATATGATGCTTCCCAAGTGCATGTTTCTGAAGCCAATGAGGATCCTAATGAGAAGTATGTTCACAATGTCGCGTCCAAGAGTGTTGGCGTGAGGGTTAAGAAGGTTCTAGATCCTGAAGTAGCTGCTTTGCTTGATGATAGTGATTTGTCGAGGTTTGGTTCCGACATTGAAGACTTGGAAGAGGATTTTGTTGTTCAAGCAAACTTATCCAAAGAAGGAACTGACAAGCCCATGGAATCTGATCTAACCAATTTGAAGATAAATGATGAGGGCCCTTCTTGCCCTACAACAACAATGGGTGATCTTAAGTCTGAGGATCGAATTGAAAATCCAAAGGTTAATGCTAGACATGACGATATGGTTGAAAAACCACGAGAACACCGTCTTTTAGATGAACAATTTGATTTACTTGTGGGACAAGAGTATGAAACAGATGAAGAAAAGTATGATGATTATGATGGGAAGTTTGATGACTATGATTCTGAAGTAGCTGACGAAGAGGAAGCCCTTGCTGAGAAGCTGAAGAATACTCTGATGGGTAATCATGTCATGGATGATATGGATATTGATGGCAAGTATATGGCTCCTGCTGATTTATTGAAAGATAACGAGGCTTCAAAGCATAAGGAGGTTCTGGAATCTGCTACAGCTGTAATTCGCCGATGTGTGGAATATGCCGAGAAATATGAAAATGAAGAAGATCAAGATCTGGATGAGTTTGTTGTACAGGAAAGCAGTGATGAATCCGAAAAGTGGGACTGTGATACTATTGTTTCTACGTATTCGAATCTCGATAACCATCCAGGGAAAATTCAGGCTCCTGAAGGAAGGAGGAAGAAGAAATTGTCCGAATCTGTCTTTGGAGCCTTGAACTCTAGTAATAATAATGTGATAGCTCTTGGAGGGAAAGAGAGGCTTCCTGTTGACTTTCTTCCCCATGTGAAGAAACCTTCTTCAACACAAAAGGTGAAGAAGAGTGTTGGTACCTTGACGCCTGATCAGCTGAAAAGGAAGCAGCATGGTCAAGAGTCCAAGGAAGAGAAGAAGGAAAGGAAGAGTGCTGTTAAAGAGGAAAGGCGTGAAGCACGGCAAACGAAAAAGGAAATGAAGGGACTTTACAACGGTGAGGCTAAACGTGCTCAAAGAGTAGCTGCTACATCGGGGCCATCTTCCATCCATCTCATGTGA 1632 44.36 MGRKKKFFDKKKSATFQLHARDSSDPVYEENPDDDRVFVRVDNNPYTLADDSAYPDAVHSVFADAPEDPDGDGNDNCVLGNPVGVQAVNGGPAPLPDHVRKEIIELGFPDDGYNYLLHLREIRNTGGGSAFYQNPKAKLDQLPLDVKAYDASQVHVSEANEDPNEKYVHNVASKSVGVRVKKVLDPEVAALLDDSDLSRFGSDIEDLEEDFVVQANLSKEGTDKPMESDLTNLKINDEGPSCPTTTMGDLKSEDRIENPKVNARHDDMVEKPREHRLLDEQFDLLVGQEYETDEEKYDDYDGKFDDYDSEVADEEEALAEKLKNTLMGNHVMDDMDIDGKYMAPADLLKDNEASKHKEVLESATAVIRRCVEYAEKYENEEDQDLDEFVVQESSDESEKWDCDTIVSTYSNLDNHPGKIQAPEGRRKKKLSESVFGALNSSNNNVIALGGKERLPVDFLPHVKKPSSTQKVKKSVGTLTPDQLKRKQHGQESKEEKKERKSAVKEERREARQTKKEMKGLYNGEAKRAQRVAATSGPSSIHLM 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 457175 459726 - Conep20aG0010800.1 Cone20ag0103 460007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0103 543 MobiDBLite consensus disorder prediction 234 248 - -
Cone20ag0103 543 PANTHER LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED 1 543 IPR007307 GO:0000056(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0030688(PANTHER)|GO:0042274(PANTHER)|GO:0042274(InterPro)
Cone20ag0103 543 MobiDBLite consensus disorder prediction 469 483 - -
Cone20ag0103 543 Coils Coil 493 520 - -
Cone20ag0103 543 MobiDBLite consensus disorder prediction 222 251 - -
Cone20ag0103 543 MobiDBLite consensus disorder prediction 484 523 - -
Cone20ag0103 543 MobiDBLite consensus disorder prediction 460 543 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0103 K14798 - - mdm:103450416 578.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1380 Cone-Chr17:9575901 Cone20ag0103 Cone-Chr20:457175 2.00E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1044 . Blo12g00897 . . . Bpe04g00230 Bma04g00226 . . . Cma01g01947 . Car01g01521 . . . . . . . . . . . . . . . . . . . . Cone17ag1380 Cone20ag0103 Lsi04g01717 . . . . . . . . . . . . . . . . . . . Cpe02g00092 . . . . . . . Cla05g01899 Cam05g2035 Cec05g2043 Cco05g2099 Clacu05g2027 Cmu05g1907 Cre05g2029 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004778 0 1 1 1 1 1 1 1 1 1 1 1 1 4 2 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35