Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0105 ATGAAGATCCAGTGCGACGTATGTGAAAAAGACGAAGCCGCGGTGTACTGCACGCCGGACGAGGCGGCGCTCTGTGATTCCTGCGATCACAGAGTCCACCATGCCAACAAGCTGGCTTCCAAACACCAGCGTTTCTCTCTCATCCACCCTTCTGCTAAGCAATTCCCTCTCTGCGATATCTGCCAGGAGCGGCGAGCTTTCTTGTTCTGTCAACAAGACAGAGCGATTTTATGCAGAGAGTGTGATCTTCCTATCCACTCGGCCAACGAGTCGACTCAGAACCATAACAGGTTTCTTCTAACCGGAGTCAAGTTATCTGCCGCACCAGCTCTCTACACCTCCTCCGCCGCCGCCGCAGCCTCTGTAACCACTGCTGGTGGTGGTCCCCTCGTACCTGATCATAACAACAACAAGTCAAAGCCCTCGTTGAAGTTGAACCACTCTGTTTCTGATTCACCTGCAGTTTCAAATCCAGATTCGATTTCTAAGAGATCATCATTATCATCTAACACGAGCATGAACAACAACAAGGATATGGAGGCTTTGGTCATTAATGAAGAGGGAAGTGGGTTCAGAAGCAGCAGCATATCGGAGTATTTGATCCAAACTCTTCCTGGATGGCACTTCGAAGATTTTCTAGACTCATCCTCTGTTCCTTTTGGTTTCTGTAAGAGTAGTAATGAAGTTATGTCACCATTTATGGAGGGAGATATAGAAAGAGCAAGTTTGAGTCCATTTTCATCGGAAAGTTTAGGAATTTGGGTCCCACAAGCCACACTACCACCTCCTCCTCCGCCTCTGTTCTGTTCTTCCCACATGGTTAATAATAATTATAATGATAATGTGTTCAGAGATTCAAATGTGAGAGCTGTACAGAGAGGAGGAGGATTGATAGAGATGATGGGTTTGCTGTTCCACAAATCAATAGCCCCCCATCCATTATCTCTTAAGAGATCTAGACCTTTCCGGTAG 972 46.71 MKIQCDVCEKDEAAVYCTPDEAALCDSCDHRVHHANKLASKHQRFSLIHPSAKQFPLCDICQERRAFLFCQQDRAILCRECDLPIHSANESTQNHNRFLLTGVKLSAAPALYTSSAAAAASVTTAGGGPLVPDHNNNKSKPSLKLNHSVSDSPAVSNPDSISKRSSLSSNTSMNNNKDMEALVINEEGSGFRSSSISEYLIQTLPGWHFEDFLDSSSVPFGFCKSSNEVMSPFMEGDIERASLSPFSSESLGIWVPQATLPPPPPPLFCSSHMVNNNYNDNVFRDSNVRAVQRGGGLIEMMGLLFHKSIAPHPLSLKRSRPFR 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 463874 465273 - Conep20aG0011100.1 Cone20ag0105 460009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0105 323 MobiDBLite consensus disorder prediction 128 174 - -
Cone20ag0105 323 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cone20ag0105 323 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone20ag0105 323 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Cone20ag0105 323 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone20ag0105 323 MobiDBLite consensus disorder prediction 135 174 - -
Cone20ag0105 323 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone20ag0105 323 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
Cone20ag0105 323 Gene3D Classic Zinc Finger 1 97 - -
Cone20ag0105 323 CDD Bbox1_BBX-like 57 100 IPR049808 -
Cone20ag0105 323 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 270 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone20ag0105 323 FunFam B-box zinc finger protein 21 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1103 Cone-Chr10:7787512 Cone20ag0105 Cone-Chr20:463874 2.51E-60 dispersed
Cone18ag0848 Cone-Chr18:5803138 Cone20ag0105 Cone-Chr20:463874 8.15E-36 dispersed
Cone20ag0105 Cone-Chr20:463874 Cone3ag1218 Cone-Chr3:30922973 2.91E-58 dispersed
Cone17ag1378 Cone-Chr17:9569772 Cone20ag0105 Cone-Chr20:463874 2.54E-135 wgd
Cone20ag0105 Cone-Chr20:463874 Cone4ag1948 Cone-Chr4:13737676 3.97E-85 wgd
Cone20ag0105 Cone-Chr20:463874 Cone6ag1668 Cone-Chr6:12689471 5.94E-24 wgd
Cone20ag0105 Cone-Chr20:463874 Cone9ag1590 Cone-Chr9:11408047 1.06E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45550 None None None None Cone TR