Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0106 | ATGGCTGGCTTCTTCTATCTAGGAGGAAGACTAGTCGAAGAAGGCCCAGGCCCAGTACCGCCACCACAAGCAAGCGCAAGCAGCAGCAAACAGGAAGAAGAAGAAAAAGCAGCAGCAGCAGCAGAAGATCAAGAAATTAGAGCACACAACTTGTTCTTGTACAGAAACCAAGAGATCTACAACAACAATAACAACAGCAACAAGGGTAGCTTAGAGATATGGCCGACTCAGTACAATCATCTCCAATTACAAGCTCAAAACCTAAACATCAACAACTACTTGTCGTTTGGAGTGGGTCCTAGCCGAGTTTCCGATGAGTCGTCTGGTGGTATCATGATGCCTCAATTATTAGGAGGGGGTGGTCATGGTTTAGGATCGGTTGGAGGAGGAGGGACGAATTGCCAAGATTGTGGGAACCAAGCTAAAAAAGACTGTCCCCATTTACGTTGTAGGACTTGTTGTAAGAGCAGAGGGCTTCCTTGCCAGACCCACGTAAAGAGCACGTGGGTTCCAGCCGCTAAACGCCGCGAGCGGCAGCAACAGCAACAGCCGCAGCAAAATCAACCTCAGCAAGAACAGCAGCTCTTTATAAATTCCAATCCCAAACGACCGAGAGAAAATCGATTAGCCACCTCCGTTGCGACTTCGAGTCATCATCATCGTGATCTAGTTGCTTCTCATGCTGATCGTTTACCCTCTTCCACGTCAGGGTTAGAGGTAGCGCAATTTCCTGCTGAAGTAAGTTCTCCAGCAGTTTTCCGGTGTGTGAAAGTCAGCTCAATGGACGATGCAGATGAGGAGTTTGCTTATCAGGCGGCTGTAAACATCGGAGGGCATGTTTTCAAGGGAATTCTTTACGATCAAGGCCCTGATCGTAATTACACTACTCCAGTCGGTGAGAGCTCGTTAGGTCACGGTAATGTCATCGGAGCAACCAATACCACGATGGTGATGACCAATACTAACCCCCCAGGTGTCACATTGCTGCAGGTTGACCATTCTTCGCTCTATCCCGCTCCACTCAATGCATTTATGGCTGGTACGCAGTTTTTCCCGCCCTCAAGGTCTTGA | 1071 | 48.55 | MAGFFYLGGRLVEEGPGPVPPPQASASSSKQEEEEKAAAAAEDQEIRAHNLFLYRNQEIYNNNNNSNKGSLEIWPTQYNHLQLQAQNLNINNYLSFGVGPSRVSDESSGGIMMPQLLGGGGHGLGSVGGGGTNCQDCGNQAKKDCPHLRCRTCCKSRGLPCQTHVKSTWVPAAKRRERQQQQQPQQNQPQQEQQLFINSNPKRPRENRLATSVATSSHHHRDLVASHADRLPSSTSGLEVAQFPAEVSSPAVFRCVKVSSMDDADEEFAYQAAVNIGGHVFKGILYDQGPDRNYTTPVGESSLGHGNVIGATNTTMVMTNTNPPGVTLLQVDHSSLYPAPLNAFMAGTQFFPPSRS | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 478496 | 479784 | + | Conep20aG0011200.1 | Cone20ag0106 | 460010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0106 | 356 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cone20ag0106 | 356 | Pfam | Domain of unknown function (DUF702) | 131 | 291 | - | - | |
Cone20ag0106 | 356 | NCBIfam | putative zinc finger domain, LRP1 type | 133 | 175 | IPR006510 | - | |
Cone20ag0106 | 356 | NCBIfam | LRP1 C-terminal domain | 242 | 290 | IPR006511 | - | |
Cone20ag0106 | 356 | MobiDBLite | consensus disorder prediction | 174 | 219 | - | - | |
Cone20ag0106 | 356 | MobiDBLite | consensus disorder prediction | 172 | 222 | - | - | |
Cone20ag0106 | 356 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 350 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0106 | Cone-Chr20:478496 | Cone5ag1461 | Cone-Chr5:9602763 | 9.03E-42 | dispersed | |
Cone12ag1176 | Cone-Chr12:9305353 | Cone20ag0106 | Cone-Chr20:478496 | 2.21E-14 | wgd | |
Cone17ag1376 | Cone-Chr17:9557174 | Cone20ag0106 | Cone-Chr20:478496 | 1.75E-185 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone4ag1946 | Cone-Chr4:13719543 | 4.69E-88 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone6ag1659 | Cone-Chr6:12647671 | 4.16E-53 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone7ag1860 | Cone-Chr7:12025045 | 2.98E-78 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone8ag0832 | Cone-Chr8:8313349 | 2.89E-51 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone8ag1222 | Cone-Chr8:10333267 | 1.47E-37 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone9ag1584 | Cone-Chr9:11367151 | 9.87E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45551 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0106 | K27807 | - | csv:101213154 | 330.102 |