Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0106 ATGGCTGGCTTCTTCTATCTAGGAGGAAGACTAGTCGAAGAAGGCCCAGGCCCAGTACCGCCACCACAAGCAAGCGCAAGCAGCAGCAAACAGGAAGAAGAAGAAAAAGCAGCAGCAGCAGCAGAAGATCAAGAAATTAGAGCACACAACTTGTTCTTGTACAGAAACCAAGAGATCTACAACAACAATAACAACAGCAACAAGGGTAGCTTAGAGATATGGCCGACTCAGTACAATCATCTCCAATTACAAGCTCAAAACCTAAACATCAACAACTACTTGTCGTTTGGAGTGGGTCCTAGCCGAGTTTCCGATGAGTCGTCTGGTGGTATCATGATGCCTCAATTATTAGGAGGGGGTGGTCATGGTTTAGGATCGGTTGGAGGAGGAGGGACGAATTGCCAAGATTGTGGGAACCAAGCTAAAAAAGACTGTCCCCATTTACGTTGTAGGACTTGTTGTAAGAGCAGAGGGCTTCCTTGCCAGACCCACGTAAAGAGCACGTGGGTTCCAGCCGCTAAACGCCGCGAGCGGCAGCAACAGCAACAGCCGCAGCAAAATCAACCTCAGCAAGAACAGCAGCTCTTTATAAATTCCAATCCCAAACGACCGAGAGAAAATCGATTAGCCACCTCCGTTGCGACTTCGAGTCATCATCATCGTGATCTAGTTGCTTCTCATGCTGATCGTTTACCCTCTTCCACGTCAGGGTTAGAGGTAGCGCAATTTCCTGCTGAAGTAAGTTCTCCAGCAGTTTTCCGGTGTGTGAAAGTCAGCTCAATGGACGATGCAGATGAGGAGTTTGCTTATCAGGCGGCTGTAAACATCGGAGGGCATGTTTTCAAGGGAATTCTTTACGATCAAGGCCCTGATCGTAATTACACTACTCCAGTCGGTGAGAGCTCGTTAGGTCACGGTAATGTCATCGGAGCAACCAATACCACGATGGTGATGACCAATACTAACCCCCCAGGTGTCACATTGCTGCAGGTTGACCATTCTTCGCTCTATCCCGCTCCACTCAATGCATTTATGGCTGGTACGCAGTTTTTCCCGCCCTCAAGGTCTTGA 1071 48.55 MAGFFYLGGRLVEEGPGPVPPPQASASSSKQEEEEKAAAAAEDQEIRAHNLFLYRNQEIYNNNNNSNKGSLEIWPTQYNHLQLQAQNLNINNYLSFGVGPSRVSDESSGGIMMPQLLGGGGHGLGSVGGGGTNCQDCGNQAKKDCPHLRCRTCCKSRGLPCQTHVKSTWVPAAKRRERQQQQQPQQNQPQQEQQLFINSNPKRPRENRLATSVATSSHHHRDLVASHADRLPSSTSGLEVAQFPAEVSSPAVFRCVKVSSMDDADEEFAYQAAVNIGGHVFKGILYDQGPDRNYTTPVGESSLGHGNVIGATNTTMVMTNTNPPGVTLLQVDHSSLYPAPLNAFMAGTQFFPPSRS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 478496 479784 + Conep20aG0011200.1 Cone20ag0106 460010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0106 356 MobiDBLite consensus disorder prediction 1 42 - -
Cone20ag0106 356 Pfam Domain of unknown function (DUF702) 131 291 - -
Cone20ag0106 356 NCBIfam putative zinc finger domain, LRP1 type 133 175 IPR006510 -
Cone20ag0106 356 NCBIfam LRP1 C-terminal domain 242 290 IPR006511 -
Cone20ag0106 356 MobiDBLite consensus disorder prediction 174 219 - -
Cone20ag0106 356 MobiDBLite consensus disorder prediction 172 222 - -
Cone20ag0106 356 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 350 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0106 Cone-Chr20:478496 Cone5ag1461 Cone-Chr5:9602763 9.03E-42 dispersed
Cone12ag1176 Cone-Chr12:9305353 Cone20ag0106 Cone-Chr20:478496 2.21E-14 wgd
Cone17ag1376 Cone-Chr17:9557174 Cone20ag0106 Cone-Chr20:478496 1.75E-185 wgd
Cone20ag0106 Cone-Chr20:478496 Cone4ag1946 Cone-Chr4:13719543 4.69E-88 wgd
Cone20ag0106 Cone-Chr20:478496 Cone6ag1659 Cone-Chr6:12647671 4.16E-53 wgd
Cone20ag0106 Cone-Chr20:478496 Cone7ag1860 Cone-Chr7:12025045 2.98E-78 wgd
Cone20ag0106 Cone-Chr20:478496 Cone8ag0832 Cone-Chr8:8313349 2.89E-51 wgd
Cone20ag0106 Cone-Chr20:478496 Cone8ag1222 Cone-Chr8:10333267 1.47E-37 wgd
Cone20ag0106 Cone-Chr20:478496 Cone9ag1584 Cone-Chr9:11367151 9.87E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45551 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0106 K27807 - csv:101213154 330.102