Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0107 ATGGCTGGTCGCGATTGCTGTCCGACGATGGATCTGTTACGTTCGGAGCCGATGCAATTGGTGCAATTGATTATCCCGATCGAAGCAGCGCACCGGGCGATCTCCTACCTTGGAGATCTTGGCCTTTTCCAATTCAAAGACCTCAATGCAGAGAAAAGCCCATTCCAGCGAACATGTGCTGCTCAGATCAAAACAGCTGGGGAAATGGATCGTAAGCTACGATTCTTCAGGGAACAAATGAAAAAGGCTGGTTTGTCACCCTCAATAAGGTCTTTCACAGGTGCAGATATTGATCTGGATAACTTGGAGGTGAAACTTGGAGAACTTGAAGCTGAATTGTTAGAGATAAATGCAAACAATGAAAAGTTACGGCACAATTATAATGAGCTATTAGAATATAAACTTGTTCTGCAGAAGAGGAGTGCTAGATTCTACTGTTATTTCTTCTGGTTAGACCACAACTCTGAAGCCTCAACTTCACTTGCACCTGTCCTGATGCTGGAGAGTTTTTTGGTTCAACAGAGGGAGCTTGAATACAACTCTGGTGAAGGATCTATTGACAGTCCATTGTTGCTGGAACAAGAAATGGCAACAGATCCTATGAAGCATGTAAAACTAGGATATGTCAGTGGTCTTGTTCTGAGAGAAAAATCAATGGCTTTCGAAAGGATTTTGTTTCGTGCAACCAGGGGTAATGTGTTCCGAAGCAAGTTGTGGTTGCGGAGGATGTCACTGATCCTGTGTCAGGAGAGAAGAGCAAAAAATAAAATTTTGAAGATATGCGAAGCTTTTAGAGCAAATCGTTACCCTTTCACAGAGGACTTGAGCAAACAATTTCAGATGATTTCAGAGGTGACTGGAAGACTTTCTGAGCTGAAGACTACTATTGATGTTGGGTTGACACACCAGAGTAATCTGTTGCAGACAATTGGTCGTCAATACGAGGACTGGAATTCTCTGGGGAAGCGAGAAAAGTCCATTTATCACACTTTAAATATGCTAAGCATTGATGTGACAAAAAAATGTCTTGTAGCAGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGCTTAAAAATGCAATGCAACGGGCAACCTTTGACAGCAATTCTCAAGTTGGGGCCATATTCCAAGTTCTGCATACAAAGGAACAACCACCAACATACTTCTGTACCAACAAGTTTACTTCTTCATTTCAGGAAATTGTGGATGCTTATGGAGTTGCCAGATACCGGGAAGCAAACCCTGGGGTTTACACAGTCATTACTTTCCCTTTCCTTTTCGCTGTAATGTTCGGTGATTGGGGCCATGGTATGTGCTTGTTGGTGGCAACAATATATTTCATAATGAGGGAGAAAAAATTTTCCAGTCAGAAACTTGGAGATATCATTGAAATGACGTTCGGTGGCCGTTATGTTATCTTGATGATGGCGCTGTTTTCAATCTACACAGGATTTATATATAATGAATTCTTTTCAGTTCCATTCGAACTATTTGGACCTTCCGCATATGGATGTCGTGATCTTGGCTGCAGGGATGCTACCACTGTAGGTTTAATAAAAGTGCGTGACACTTACCCATTTGGTGTCGACCCGAAATGGCATGGTAGCCGAAGTGAATTACCATTTCTCAATTCATTGAAGATGAAGATGTCTATACTACTGGGAGTTACCCAAATGAACCTTGGGATTATACTGAGCTACTTTAATGCAAAATTCTTTGGAGACAGCATAAATATTTGGCACCAATTCGTTCCACAGATGATTTTTTTGAACAGCTTGTTTGGATACCTTTCTCTCCTCATAATTGTGAAATGGTGTACTGGCTCTCAAGCTGATCTTTATCACGTAATGATATACATGTTCCTCAGTCCTGCTGATGATCTTGGTGATAATCAGCTTTTTGCAGGCCAGAAATTTCTTCAGATTCTGCTCCTCCTATCTGCCGTTGTTGCTGTACCATGGATGTTGTTTCCCAAGCCTTTTCTTTTAAAGAAACAACACAAAGAGAGGCACAAAGGTCAGACATACACACCTCTTCACACTATTGATGACCCTGTTGAAATAGAGGCATATCAGGACTCTCATGGCCATGGGGATTTTGAGTTTAGTGAGGTCTTTGTACATCAACTGATACATACCATAGAGTTTGTGCTTGGGGCAATTTCTAATACAGCATCATATTTACGTTTGTGGGCACTCAGTCTTGCTCATTCAGAATTGTCTAGCGTATTCTATGACAAGGTTCTACTTCTAGCTTGGGGGTACAATAATATCATCATTCTTATTATTGGCTTCGTTGTATTCGTGTGTGCAACGGTTGGCGTTTTACTAGTTATGGAAACCTTAAGTGCATTCCTGCATGCCTTGCGGCTGCACTGGGTTGAGTTCCAAAACAAGTTCTATGAGGGTAATGGTTACAAATTTAACCCTTTTTGCTTCTCATTACTTCGTGAGGAAGATGACTAA 2466 41.36 MAGRDCCPTMDLLRSEPMQLVQLIIPIEAAHRAISYLGDLGLFQFKDLNAEKSPFQRTCAAQIKTAGEMDRKLRFFREQMKKAGLSPSIRSFTGADIDLDNLEVKLGELEAELLEINANNEKLRHNYNELLEYKLVLQKRSARFYCYFFWLDHNSEASTSLAPVLMLESFLVQQRELEYNSGEGSIDSPLLLEQEMATDPMKHVKLGYVSGLVLREKSMAFERILFRATRGNVFRSKLWLRRMSLILCQERRAKNKILKICEAFRANRYPFTEDLSKQFQMISEVTGRLSELKTTIDVGLTHQSNLLQTIGRQYEDWNSLGKREKSIYHTLNMLSIDVTKKCLVAEGWCPVFATNQLKNAMQRATFDSNSQVGAIFQVLHTKEQPPTYFCTNKFTSSFQEIVDAYGVARYREANPGVYTVITFPFLFAVMFGDWGHGMCLLVATIYFIMREKKFSSQKLGDIIEMTFGGRYVILMMALFSIYTGFIYNEFFSVPFELFGPSAYGCRDLGCRDATTVGLIKVRDTYPFGVDPKWHGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFNAKFFGDSINIWHQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPADDLGDNQLFAGQKFLQILLLLSAVVAVPWMLFPKPFLLKKQHKERHKGQTYTPLHTIDDPVEIEAYQDSHGHGDFEFSEVFVHQLIHTIEFVLGAISNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNIIILIIGFVVFVCATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGNGYKFNPFCFSLLREEDD 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 482563 487730 + Conep20aG0011300.1 Cone20ag0107 460011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0107 821 PIRSF ATP6V0A1 8 821 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cone20ag0107 821 PANTHER VACUOLAR PROTON ATPASES 10 819 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Cone20ag0107 821 Coils Coil 92 126 - -
Cone20ag0107 821 Pfam V-type ATPase 116kDa subunit family 36 813 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1105 Cone-Chr10:7840508 Cone20ag0107 Cone-Chr20:482563 0 dispersed
Cone20ag0107 Cone-Chr20:482563 Cone3ag1221 Cone-Chr3:30955706 0 dispersed
Cone17ag1375 Cone-Chr17:9549760 Cone20ag0107 Cone-Chr20:482563 2.46E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0107 K02154 - mdm:114826385 1268.45