Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0108 ATGGACCGATCGACACTGCGTGCTCTCCTCGTCTCTTCCCTGCTATCCGCTGTGGTAGCGTCCAGCATATCCTCCGACGATTCTCTGATTCGACAAGTCGTATCGGGCGGAGACGATGATGATCAACTCCTGAGCGCCGAGCACCACTTCGCGGGCTTTAAAGCTAGATTCGGAAAGACCTACGCGGATCAAGAGGAGCACGATTACAGGTTTACCGTCTTCAAGAGCAACTTACGCAGAGTAAATCGTCACCAGAAGCTCGATCCTAGTGCTGTCCATGGCGTCACCAAGTTCTTTGATCTTACTCCGGCTGAGTTTCGACAGAGATTTCTCGGCCTCAAGCGTCATCTTGGCCTCCCTGCTGATGTTCATAAGGCTCCGATCCTTCCTACCAATGACCTCCCCTCCGATTTTGACTGGCGCGAGTACGGTGCCGTCACGCCAATTAAAGATCAGGGATCTTGTGGATCGTGCTGGTCTTTCAGTGCAGCCGGAGCGTTAGAAGGAGCTCACTTCTTGTCGACTGGAGAGCTTGTTAGTTTGAGTGAGCAACAGCTCGTGGATTGTGATCATGAGTGCGATCCAGAGGAAGAAGGTGCGTGTGACTCAGGCTGCAATGGTGGACTAATGAACTCGGCCTTTGAGTACATATACAAGGTTGGCGGATTGGAGCGAGAGAAGGATTATCCATATACCGGGACGGATCGCGGATCCTGCAAATTCGACAAGAGAAAGATCGTTGCTTCTGTAGCCAACTTCAGTGTCATTTCCATTGACGAAGACCAAATTGCAGCTAATTTGGTCAAGAATGGCCCTCTTGCAGTTGCAATCAATGCAGCCTTTATGCAGACCTACGTTCGAGGCGTTTCGTGCCCGTATATCTGTTCGAAGAATCTGTTGGATCATGGAGTGCTTTTGGTGGGCTATGGCTCTGCTGGATTTGCTCCTATCCGGTTTAAGAACAAGGAATATTGGATTATAAAGAATTCTTGGGGAGAAAACTGGGGAGAGAATGGATATTACAAGATCTGTAAGGGTAAGAATATTTGTGGAGTCGACTCCTTGGTCTCTACTGTGGCTGCCACCACCCTATGA 1095 49.68 MDRSTLRALLVSSLLSAVVASSISSDDSLIRQVVSGGDDDDQLLSAEHHFAGFKARFGKTYADQEEHDYRFTVFKSNLRRVNRHQKLDPSAVHGVTKFFDLTPAEFRQRFLGLKRHLGLPADVHKAPILPTNDLPSDFDWREYGAVTPIKDQGSCGSCWSFSAAGALEGAHFLSTGELVSLSEQQLVDCDHECDPEEEGACDSGCNGGLMNSAFEYIYKVGGLEREKDYPYTGTDRGSCKFDKRKIVASVANFSVISIDEDQIAANLVKNGPLAVAINAAFMQTYVRGVSCPYICSKNLLDHGVLLVGYGSAGFAPIRFKNKEYWIIKNSWGENWGENGYYKICKGKNICGVDSLVSTVAATTL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 487807 489691 - Conep20aG0011400.1 Cone20ag0108 460012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0108 364 SMART pept_c1 134 360 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone20ag0108 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Cone20ag0108 364 Pfam Papain family cysteine protease 134 358 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone20ag0108 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Cone20ag0108 364 FunFam Cysteine protease RD19A 28 360 - -
Cone20ag0108 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 47 352 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cone20ag0108 364 Gene3D Cysteine proteinases 24 360 - -
Cone20ag0108 364 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone20ag0108 364 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone20ag0108 364 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone20ag0108 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Cone20ag0108 364 CDD Peptidase_C1A 135 359 IPR039417 -
Cone20ag0108 364 SMART Inhibitor_I29_2 50 106 IPR013201 -
Cone20ag0108 364 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Cone20ag0108 364 SUPERFAMILY Cysteine proteinases 46 358 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0108 K01373 - - cit:102608509 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0108 Cone-Chr20:487807 Cone5ag0365 Cone-Chr5:1554828 3.24E-125 dispersed
Cone20ag0108 Cone-Chr20:487807 Cone20ag0112 Cone-Chr20:503993 3.61E-06 proximal
Cone12ag1175 Cone-Chr12:9301147 Cone20ag0108 Cone-Chr20:487807 8.45E-192 wgd
Cone17ag1374 Cone-Chr17:9547756 Cone20ag0108 Cone-Chr20:487807 6.74E-227 wgd
Cone20ag0108 Cone-Chr20:487807 Cone8ag1221 Cone-Chr8:10329136 4.90E-191 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102