Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0110 ATGGCGGAACACAACTCCGGCGGGTCGAGAATGTGGTGTTCTGTGCCCGAAAAACTGCAGCTCCATGGTGCCATGCTGGCTCTCCAGTTTGGCTACGCTGGCTTCCACGTGGTCTCCCGCGCTGCTCTTAACATGGGAATCAGTAAACTTGTCTTCCCAGTTTACCGGAACATCATTGCCTTGCTTCTCCTCCTCCCCTTCGCCTATTTCCTTGAAAAGAAAGAGAGGCCTGCTATAAGTCTGAATTTCCTTGTCCAATTCTTCCTCCTCGCACTCGTTGGAATAACAGCAAACCAAGGATTCTACTTACTGGGCCTGGACAACACGTCACCCACCTTCGCCTCCGCAATCCAAAACTCCGTACCGGCCATCACTTTCCTCATGGCTGCAATTCTCCGCATAGAGCGAGTTCAGCTGAACCGGAAAGATGGCATAGCAAAAGTGGCGGGAACAATATTCTGCGTGGCGGGGGCCACAGTGATAACTCTCTACAAAGGCCCAACCATATACAGCCCAGCTCCACATCTACAAGTCAGCCCAATTACACGGCCCGTAGACGACATGTTCCTCTCACTTGGAGACGCAGAGGGAAAGAATTGGACCCTTGGCTGCATCTTTCTGATCGGCCACTGTTTGTCATGGTCCGGTTGGCTCGTTCTGCAGGCCCCGGTTCTGAAAAAATACCCTGCCCGACTCTCCGTCACGTCCTTCACGTGCTTCTTTGGACTTATACAGTTCGTTATCATTGCCGCCATTTTCGAGAGGGACCTTGATGCTTGGGTTTTTCACTCTGGTGGTGAAGTTTTCACTATTCTCTACGCGGGAGTGGTGGCGTCTGGAATAGCTTTTGCAGTTCAGATATGGTGCATTGACAGAGGGGGTCCGGTTTTCGTGGCGGTTTATCAACCGGTTCAGACACTCGTCGTTGCTATCATGGCTTCTATTGCTTTAGGGGAAGAGTTTTTCTTGGGAGGGATAATAGGGGCAGTGTTGATAATACTGGGGTTGTATCTTGTGCTGTGGGGAAAGAATGAGGAAAAGAAGTTAGCAGTGGCTACACAGCAAAAGCAGAAGGCAGTGATTGAGTCCAGTGCGGAGCACAGCAACAGTAGATACAAGCTAGGCCCAAGAAGTGTACCTAGATCTGTTGTCATTTTGCACAAAGGCCCATTTAAGTCGGATTGGGGAAGATTCATCATGATGGAAGTGAGAATGGTGCGTATTGGTTTCATGATTCTTACAGGTTTATGCTTGATTCTGAGTATAGCAGATATCTGTAATGGTGGAGTGACAAGTTCTTATGTTCGGAATGACGACTTGTCGCTTGATATGCCTCTAGACAGTGATGTTTTCAGGATCGCTCCTGGTTTTAATGCTCCTCAACAGGTTCATATAACACGAGGAGATTATGAGGGGAGAGGTGTGATCGTTTCTTGGGTTACTCCAGATGAACCGGGTTCGAGCACTGTGGTTTACTGGGCTGAAAATAGTGAGCTCAAGAACCAAGCAGATGGCTTTTTTGTCACTTACAACTACTTTAATTATACATCTGAGTTTATTCATCACTGCACTATTGCAGACTTGGAGGTTTGTAACACTTTACACAATTTTCTTTCGATACCGAATACTACTACGAGGTCGGGATTGGAAATACGACACAATAATTTTGGTTTATCACTCCTCCTAGGGTTGGCCCTGATGTGCTTTATACCTTTGGCCTTATCGGGTGAACTCATACCATTTAAACCTTTTACTCATCGCTATCATGTACCCATAAGGAGTCTGATATCACGTCTCCTCTCTGGTACTCCATTAAGAGGGCTTAAGCGGAAATACACTCCTCAATACAAGTGGCTAGAACAGGAGCTTCCGAAAGTAAACACAACGGAGACACCATGGCTCATTGTTCTTATGCATTCTCCTTATACAATAGCTATATAA 1941 46.99 MAEHNSGGSRMWCSVPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAISLNFLVQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRIERVQLNRKDGIAKVAGTIFCVAGATVITLYKGPTIYSPAPHLQVSPITRPVDDMFLSLGDAEGKNWTLGCIFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSFTCFFGLIQFVIIAAIFERDLDAWVFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFFLGGIIGAVLIILGLYLVLWGKNEEKKLAVATQQKQKAVIESSAEHSNSRYKLGPRSVPRSVVILHKGPFKSDWGRFIMMEVRMVRIGFMILTGLCLILSIADICNGGVTSSYVRNDDLSLDMPLDSDVFRIAPGFNAPQQVHITRGDYEGRGVIVSWVTPDEPGSSTVVYWAENSELKNQADGFFVTYNYFNYTSEFIHHCTIADLEVCNTLHNFLSIPNTTTRSGLEIRHNNFGLSLLLGLALMCFIPLALSGELIPFKPFTHRYHVPIRSLISRLLSGTPLRGLKRKYTPQYKWLEQELPKVNTTETPWLIVLMHSPYTIAI 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 496952 500822 + Conep20aG0011600.1 Cone20ag0110 460014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0110 646 Gene3D - 459 545 - -
Cone20ag0110 646 Pfam Purple acid Phosphatase, N-terminal domain 460 529 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone20ag0110 646 PANTHER WAT1-RELATED PROTEIN 24 359 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cone20ag0110 646 Pfam EamA-like transporter family 28 162 IPR000620 GO:0016020(InterPro)
Cone20ag0110 646 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020(InterPro)
Cone20ag0110 646 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 165 - -
Cone20ag0110 646 Gene3D - 599 644 IPR029052 -
Cone20ag0110 646 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 345 - -
Cone20ag0110 646 SUPERFAMILY Purple acid phosphatase, N-terminal domain 443 530 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1370 Cone-Chr17:9540516 Cone20ag0110 Cone-Chr20:496952 6.35E-63 dispersed
Cone20ag0110 Cone-Chr20:496952 Cone3ag0503 Cone-Chr3:2497111 4.91E-74 dispersed
Cone9ag1116 Cone-Chr9:7336197 Cone20ag0110 Cone-Chr20:496952 1.44E-66 transposed
Cone17ag1369 Cone-Chr17:9537564 Cone20ag0110 Cone-Chr20:496952 5.91E-69 wgd
Cone20ag0110 Cone-Chr20:496952 Cone4ag1945 Cone-Chr4:13711758 1.34E-193 wgd
Cone20ag0110 Cone-Chr20:496952 Cone6ag1657 Cone-Chr6:12638475 2.60E-38 wgd
Cone20ag0110 Cone-Chr20:496952 Cone7ag1859 Cone-Chr7:12018231 1.34E-193 wgd
Cone20ag0110 Cone-Chr20:496952 Cone8ag1220 Cone-Chr8:10324613 1.20E-33 wgd
Cone20ag0110 Cone-Chr20:496952 Cone9ag1581 Cone-Chr9:11354951 7.41E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0110 - - - 0.0