Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0114 ATGAAATACACCAGTTACATCACCCGCCGTCGCAGAGTATATCTGAGAGTTCGAGGTCAAACAAATATGGCTGAAGAGGGACAAGTGATTGGGGTTCACAGTGCTGATTCATGGAAGCAGCTTCTCGAGAGAGGAAAGGAATCCAACAAGCTGATTGTGGTGGATTTCACCGCTTCTTGGTGCGGCCCGTGCCGTGTTATCGCGCCGTTTCTAGCCGAGCTAGCTAAGAAGATCACCGATGTCATCTTCCTTAAGGTGGATGTTGATGAAATGAGGGAAATCTCAGAGGAGTGGGGTGTGGAGGCAATGCCTACTTTCCTCTTCCTCAAGGATGGGAAGCAGGTTGATAAGGTTGTGGGCGCTAAGAAGGAGGAGCTTCAGCTCACCATCTCAAAGCATGCTGCTACTGCTGCTGCCTAA 420 50.0 MKYTSYITRRRRVYLRVRGQTNMAEEGQVIGVHSADSWKQLLERGKESNKLIVVDFTASWCGPCRVIAPFLAELAKKITDVIFLKVDVDEMREISEEWGVEAMPTFLFLKDGKQVDKVVGAKKEELQLTISKHAATAAA 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 506043 507500 + Conep20aG0012000.1 Cone20ag0114 460018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0114 139 CDD TRX_family 36 125 - -
Cone20ag0114 139 Gene3D Glutaredoxin 15 138 - -
Cone20ag0114 139 PANTHER THIOREDOXIN 24 133 IPR050620 -
Cone20ag0114 139 Pfam Thioredoxin 33 130 IPR013766 -
Cone20ag0114 139 ProSiteProfiles Thioredoxin domain profile. 11 135 IPR013766 -
Cone20ag0114 139 ProSitePatterns Thioredoxin family active site. 53 71 IPR017937 -
Cone20ag0114 139 NCBIfam thioredoxin 42 133 IPR005746 GO:0015035(InterPro)
Cone20ag0114 139 PRINTS Thioredoxin family signature 52 60 - -
Cone20ag0114 139 PRINTS Thioredoxin family signature 99 110 - -
Cone20ag0114 139 PRINTS Thioredoxin family signature 60 69 - -
Cone20ag0114 139 FunFam Thioredoxin 28 135 - -
Cone20ag0114 139 SUPERFAMILY Thioredoxin-like 24 134 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0114 K03671 - - gmx:100499879 190.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0451 Cone-Chr10:2093981 Cone20ag0114 Cone-Chr20:506043 5.09E-34 dispersed
Cone16ag0876 Cone-Chr16:9189481 Cone20ag0114 Cone-Chr20:506043 3.95E-32 dispersed
Cone19ag0977 Cone-Chr19:7401626 Cone20ag0114 Cone-Chr20:506043 7.20E-36 dispersed
Cone20ag0114 Cone-Chr20:506043 Cone2ag0173 Cone-Chr2:922761 4.55E-36 dispersed
Cone17ag1429 Cone-Chr17:9767123 Cone20ag0114 Cone-Chr20:506043 3.00E-08 transposed
Cone2ag0774 Cone-Chr2:33689598 Cone20ag0114 Cone-Chr20:506043 1.92E-29 transposed
Cone20ag0114 Cone-Chr20:506043 Cone4ag1941 Cone-Chr4:13701435 7.74E-60 wgd
Cone20ag0114 Cone-Chr20:506043 Cone6ag1656 Cone-Chr6:12637216 1.08E-53 wgd
Cone20ag0114 Cone-Chr20:506043 Cone7ag1854 Cone-Chr7:11999130 4.33E-20 wgd
Cone20ag0114 Cone-Chr20:506043 Cone9ag1580 Cone-Chr9:11353844 8.62E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000895 2 4 1 1 1 4 3 4 4 4 2 4 3 3 4 3 4 3 3 4 4 2 2 3 2 3 3 6 2 0 88