Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0115 ATGCAAAACCTGGTAATTCCTAGCAAATCACTACCTCAAGTTCCGATCCCGTCGAAGATAAGCAATGGAAACTTTGAATTCTCTCCAAAATCAACCAGACCTGCCATCTTCTTCACCGAGAAAACGAACCCGAAATTCCAAGATGCTCATTTGAATTATCTCTGCAAAAAGGGGCTCATCAGAGAAGCCATATCGGCCATCGATTCTATTCCCCAAGATGGTCCCAAGGTAGGAACAGCTACTTTTATCAGCCTGCTTCAATCTTGCATCGACACTAATTCTGTTCAACTGGGTCGGGAGCTACATGCTCGGATTAGTTTCGTCGAGGAGGCTAACTCTTTTGTAGAGACCAAGCTAGTTAGCATGTATGCGAAATGTGGGTCTTTTGATGATGCACGTAAGGTGTTTGATGGGATGCGTGAGAGAAATTTGTTCACTTGGTCAGCAATGATCGGTGCATGTTCAAGAGAGCAGAGGTGGAAGGAAGTAGTGAACCTTTTCTTGTTAATGATGGCAGATGGGGTTCTTCCTGATGATTTTCTCTTCCCTAAGATCCTTCAAGCTTGTGGAAATTCCGGCGATTTCCAGACTCTGAAATTGATTCATTCTTTAGTTATTCGATCTGGAATGATGAGCTGTTTGCGTGTGATCAATTCTATTCTAGCTGTGTATGTGAAATGCGCGAAGTTGAGTCAGGCAAGGAGATTTTTCGAGAACATGATTGAAAAAGATGGAGTCTCATGGAATGCTATTATTTCTGGGTATTGTCGGAAAGGTCAGAACGATGAAGCTCAGAAAGTATTCAATGCAATGAGCAAACAAGGGATCAAACCTGATTTAGTCACTTGGAATATAATGATTGCTAGTAGTAGCGACTCTGGAAATTGCGATCTTGCCCTTGAATTATTGAAGAAGATGGAGAATTCTGGGATAAAACCGGATGTATATACTTGGACTTCTATGATTTCCGGTTTTGCCCACAGTAACAGAACAACTAATGCTTTGGAATTGTTCAAACAGATGCTTCTGGAAAATTCTGAACCAAATGGGATTACTATAGTTAGTGCCATCTGGGCTTGTTCTTCTTTAAAATCATTGAACAAAGGAATGGAAATTCATTCTCTTGCCACTAAAACGGGACTAGTTGATGAAGTAGTTGTAGCAAACACACTAATTGACATGTACTCCAAGTGTGGAAAACTAGAAGCTGCTTGGAATGTTTTCAATAACACCTTACGGAAAGATGTGTACACTTGGAACACTATGATTGGAGGGTATTGCCAGGGTGGCTATTGCGGCAAGGCCTATGAACTCTTCATGAAAATGAGGGAGTCTGATGTTTTGCCTAATGCCGTCACATGGAATGTAATGATCTCAGGTTGTATACAGAACGGAGATGAAGATCAAGCCATGAGTCTTTTCCGAACAATGGAAAATGATGGAAAGATAAAGAGAAATACAGCATCTTGGAACGCTTTGATTTCTGGGTATCAACAGCTTGGTCAAAAAGACAAGGCATTAGGTGTGTTTAGACAGATGCAGTCTTTATGTTTAAGTCTGAATTTAGTTACCATTTTAAGTGTCTTACCCGCTTGTGCAAATTTAGTAGGAGAGAAGAAGTTAAGAGAGATTCATGCTTGTGTTCTGCGTAGAAGCCTTGAGACAGAAATCCCCATCTTAAATTCGCTTATAGACACTTATGCCAAGTCAGGGAATATTCTATATTCCAAAACCATATTTGACAATATGTTGTCTAAAGACATCATCTCTTGGAATTCATTAATTTTGGGTTATGTTTTACACGGTTGTTCAGAACAAGCACTTGCACTTTTCCATCAGATGAAGGAGTTGGGGATTAGACCAAATAGAGGTACTTTAGCTGGTGTTATTTATGCATATGGTCTCTCCGGAATGGTGGAAAAAGGGTGTCAAACTTTTTCTAGCATCACTAATGAACATCAAATAATACCAAGTATTGATCATTATTCAGCCATGATTGATCTATATGGTCGTTCCGGTAGGCTTGGAGAGGCTATGGAGTTCATAGAAAACATGCCTATTGAGCCCGAATCGTCTATTTGGGCTAATTTCTTAACTGCTTGTAGAATCCATGGGAATCTACGGCTTACCATATTTGCTGCGGAGCGTCTACTTCATTTGGAGACAGGGAATTATCTGATTCAACGGTTACTTTTACAGGCTTATAATTTATGTGGAAAGCCTGAAGACACTTCGAGATTGAGAAAGCTTCAGAAAGAGAATGCACCGAAACAAATTTACGGGCGATGCTGGATTGAAGTGAACAACACAGTTCATTCATTTGTTTCTGGTGATTATTCGGAATCGGATTCCATACATAATTGGATAAAAGAGATCGTGGGAAAAGTGAAGAGACATCATCTTCATAATCAACTCGGGATTGAGGAAGAACAGAGGGAGGAGATTGGTGGGTTCCATAGTGAAAAATGTGCAATTGCTTTTGGCCTGATTGGTTCCAACCGGAAAATGCCAACTAGTATGAGGATTGTAAAGAACTTGAGGATGTGTGGAGATTGCCATAGGACAGCCAAGTATGTCTCATTGGCTTATAGATGTGAAATTTATCTGAACGACTCTGAGTGCTTGCACCATTTTAAGGAAGGAAATTGTTCTTGTGGGGATTACTGGTAG 2670 40.3 MQNLVIPSKSLPQVPIPSKISNGNFEFSPKSTRPAIFFTEKTNPKFQDAHLNYLCKKGLIREAISAIDSIPQDGPKVGTATFISLLQSCIDTNSVQLGRELHARISFVEEANSFVETKLVSMYAKCGSFDDARKVFDGMRERNLFTWSAMIGACSREQRWKEVVNLFLLMMADGVLPDDFLFPKILQACGNSGDFQTLKLIHSLVIRSGMMSCLRVINSILAVYVKCAKLSQARRFFENMIEKDGVSWNAIISGYCRKGQNDEAQKVFNAMSKQGIKPDLVTWNIMIASSSDSGNCDLALELLKKMENSGIKPDVYTWTSMISGFAHSNRTTNALELFKQMLLENSEPNGITIVSAIWACSSLKSLNKGMEIHSLATKTGLVDEVVVANTLIDMYSKCGKLEAAWNVFNNTLRKDVYTWNTMIGGYCQGGYCGKAYELFMKMRESDVLPNAVTWNVMISGCIQNGDEDQAMSLFRTMENDGKIKRNTASWNALISGYQQLGQKDKALGVFRQMQSLCLSLNLVTILSVLPACANLVGEKKLREIHACVLRRSLETEIPILNSLIDTYAKSGNILYSKTIFDNMLSKDIISWNSLILGYVLHGCSEQALALFHQMKELGIRPNRGTLAGVIYAYGLSGMVEKGCQTFSSITNEHQIIPSIDHYSAMIDLYGRSGRLGEAMEFIENMPIEPESSIWANFLTACRIHGNLRLTIFAAERLLHLETGNYLIQRLLLQAYNLCGKPEDTSRLRKLQKENAPKQIYGRCWIEVNNTVHSFVSGDYSESDSIHNWIKEIVGKVKRHHLHNQLGIEEEQREEIGGFHSEKCAIAFGLIGSNRKMPTSMRIVKNLRMCGDCHRTAKYVSLAYRCEIYLNDSECLHHFKEGNCSCGDYW 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 507852 510716 + Conep20aG0012100.1 Cone20ag0115 460019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0115 889 Pfam PPR repeat 387 410 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat 119 143 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat 489 515 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat 145 175 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat 661 685 IPR002885 -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat 310 341 IPR002885 -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Cone20ag0115 889 FunFam pentatricopeptide repeat-containing protein At2g33680 560 786 - -
Cone20ag0115 889 Gene3D Tetratricopeptide repeat domain 558 744 IPR011990 GO:0005515(InterPro)
Cone20ag0115 889 Gene3D Tetratricopeptide repeat domain 325 479 IPR011990 GO:0005515(InterPro)
Cone20ag0115 889 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 48 197 - -
Cone20ag0115 889 Pfam PPR repeat family 586 626 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat family 244 287 IPR002885 -
Cone20ag0115 889 Pfam PPR repeat family 414 461 IPR002885 -
Cone20ag0115 889 Gene3D Tetratricopeptide repeat domain 480 546 IPR011990 GO:0005515(InterPro)
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 118 143 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 489 521 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 145 178 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 452 481 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 417 451 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 316 349 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 246 279 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 281 315 IPR002885 -
Cone20ag0115 889 NCBIfam pentatricopeptide repeat 589 622 IPR002885 -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 142 IPR002885 -
Cone20ag0115 889 Gene3D Tetratricopeptide repeat domain 91 200 IPR011990 GO:0005515(InterPro)
Cone20ag0115 889 Gene3D Tetratricopeptide repeat domain 201 308 IPR011990 GO:0005515(InterPro)
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Cone20ag0115 889 Pfam DYW family of nucleic acid deaminases 807 889 IPR032867 GO:0008270(InterPro)
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Cone20ag0115 889 SUPERFAMILY HCP-like 255 513 - -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Cone20ag0115 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cone20ag0115 889 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 450 768 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0115 Cone-Chr20:507852 Cone13ag0771 Cone-Chr13:7258763 5.57E-130 dispersed
Cone6ag1611 Cone-Chr6:12465158 Cone20ag0115 Cone-Chr20:507852 1.35E-06 dispersed
Cone17ag1367 Cone-Chr17:9534223 Cone20ag0115 Cone-Chr20:507852 6.44E-57 transposed
Cone17ag1366 Cone-Chr17:9533022 Cone20ag0115 Cone-Chr20:507852 1.25E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1013 . . . . . . . . Cmo05g00276 . . . . . . . . Bhi04g00208 . . . . . . . . . . . . . . . . Cone20ag0115 . . . . . . . . . . . . . . . . Cma05g00271 Car05g00224 . Cpe11g00224 . . . . . . . . . . . . . . . . Csa02g02091 . .