Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0124 ATGGAGTCTGCAAATCTCCATCATGATCATCACCACCTCCAAGAACAGCTTCAGCTTGTTTATGCTTCAGTTCTACCTTCATCTAATTACTATGGAGTTGGCCTTGCAAGCACCCATTCATTGTCCCCAAACTTTTCTTTCAGGAATACTGTTTACCAGAATGGAGTTAACTCCGACGGAATAAGGGATTCAAGGCTAGAAAAAAACGTCGAAATCGATCAACTAATTCGGCCTCCTGGTCCCCCGCCCCTTGATCATCATCATCCTGTTACTACTAATACTAATACAATGGTCCAAGACTTGAATTTTGAGTGGGCTAATCACAATCTTCATGATCATGAACACGATTCGCATGACAGCGGCTTCAATATTAACGATCATCATCATCTTCTATACCTTGCAAGAATCAAGCAGGAAGAGAACTCAATGTCAGAACATAACATCAATTCCTTGATTCCCATCACCGATTTTGAAGACAATTTGCAGTTTCTTTATTCCATGTCATCGTCATGTCATCAAGACTCGAAGAACAACGGTCATGAGCAAATTAGGGATAGTTTGAATGAAGATGAAGATGAAGATCACGATCATCATCATATGGGAATGAGTTATATTAGAGGGCAGTTCAGTCAGATTTACCCTAGTGTTAATATTTCGAATGGGAATTATTATAAGCAACTATCATCATCAGCATCATCACCACCCATGATCTCTACCTCACAATTAGATCATCGTTCCGATCAGATTAATTTGGCCTCTGCTAGCGCTAGATTTAATGATCATCGTCATCATCAGAGCCTAATTAGCCATTCACAATATCATCATAATGACCGGCTGCAGCAATCCTCACTTTCTTGTAGTACTACTGATCATACCACTAATGCGCAGGCTTCGATAGCCTCATTCAACAATAAAGTTGCAGAAGGGAAGAGGAACTCTAACTTGATGGAACGAAAGCCACCTCAAACTGGACCCAAGAAGTCGCGTTTAGAATCACGTTCCTCCTGCCCTCCCTTTAAGGTTAGGAAAGAGAAATTAGGCGATAGAATTGCTGCACTTCAGCAATTAGTGGCGCCATTCGGTAAGACAGACACGGCGTCCGTACTTATGGAAGCTATTGGATACATAAAATTCCTCCAAAACCAGGTGGAGACTTTAAGCGTTCCTTACATGAAGTCATCACGCAACAGCAGGAATTATGAAACCATACCCAATGCTGGTCCTTTTGAAAATGGAAACGAAGAGCCTAAAAGAGATCTCAGAAGTCGTGGGCTTTGTCTAGTGCCATTGACATGCATGTCTTACGTGACCGGAGATTACGGCGAAGATAGCGGCGGCAATAACACTACTGGTATCTGCCCACCGCCAAATTTTCTTGGCGGGACTTGTTAA 1392 42.17 MESANLHHDHHHLQEQLQLVYASVLPSSNYYGVGLASTHSLSPNFSFRNTVYQNGVNSDGIRDSRLEKNVEIDQLIRPPGPPPLDHHHPVTTNTNTMVQDLNFEWANHNLHDHEHDSHDSGFNINDHHHLLYLARIKQEENSMSEHNINSLIPITDFEDNLQFLYSMSSSCHQDSKNNGHEQIRDSLNEDEDEDHDHHHMGMSYIRGQFSQIYPSVNISNGNYYKQLSSSASSPPMISTSQLDHRSDQINLASASARFNDHRHHQSLISHSQYHHNDRLQQSSLSCSTTDHTTNAQASIASFNNKVAEGKRNSNLMERKPPQTGPKKSRLESRSSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKSSRNSRNYETIPNAGPFENGNEEPKRDLRSRGLCLVPLTCMSYVTGDYGEDSGGNNTTGICPPPNFLGGTC 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 552676 555517 + Conep20aG0013100.1 Cone20ag0124 460028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0124 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 159 434 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone20ag0124 463 MobiDBLite consensus disorder prediction 309 341 - -
Cone20ag0124 463 Gene3D - 340 400 IPR036638 GO:0046983(InterPro)
Cone20ag0124 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 392 IPR036638 GO:0046983(InterPro)
Cone20ag0124 463 CDD bHLH_AtbHLH_like 337 387 IPR045239 -
Cone20ag0124 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983(InterPro)
Cone20ag0124 463 FunFam Transcription factor bHLH123 family 340 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0124 Cone-Chr20:552676 Cone2ag0308 Cone-Chr2:1578194 6.15E-30 dispersed
Cone20ag0124 Cone-Chr20:552676 Cone16ag0730 Cone-Chr16:8430217 3.23E-31 transposed
Cone20ag0124 Cone-Chr20:552676 Cone14ag1110 Cone-Chr14:9255036 6.64E-31 transposed
Cone20ag0124 Cone-Chr20:552676 Cone17ag0159 Cone-Chr17:787632 2.68E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0124 - - - 0.0