Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0125 ATGGGGTCTTTGCAAGGGCCAGTTATTTGCCCCACTATTCGTGCAAAGCAAGCTGGTTTTCACACTATACCAGTTAATGGTCCTCTAATGGCAGTTAGACTTCATAGGAGTGAATTCTGGGGATTCAAGGGAATGATTGGTAGCAAGAGTACTAAGGTGGCCTATCGTTATGACCCTATGAACTTGAGAAAGTTCGGAATAGTACATTGTACATTCAGCTCATCATCAGATGGTAGTGGAAGCACTGCAGAGAACTTTAATCAGAATGATGAAGATTATGTCAATTCTAGTGTAGTCGAGGCCGTGGAGGTGAAGAGTGGTGCGGATGGGTTCATGATCAAAATGAGAGATGGAAGACACTTGAGATGTGTTCATAATCATCCTCAGGGTGGACATCTACCAGATTATGCCCCACATCCTGCTATAGTATTAAAGATGGAAGATGGGACGGGCCTTCTTCTCCCTATTATTGTTTTGGAGATGCCAAGTGCATTGCTCATGGCAGCAGTGCGCAATGTTCAGATTGCTAGACCTACTCTGTATCAAGTGGTGAAAGAGATGATTGACAAGATGGGCTATGAAGTCAAACTAGTTCGAGTTACCAAGAGGGTGCATGAAGCATATTTTGCTCAGTTATACCTCACCAAGATCGGTAGTGAGACCGAGTATGTCAGCTTTGATCTCCGTCCCTCAGATGCAATCAACATTGCTGTGAGATGCAAGGTCCCTATACAAGTGAATAAATATTTGGCATATAGTGATGGTATGAAAATCGTTGAATCTGCCAAGCTTTCATTACAGGCCCCGGGCTCCGATGGCTTATTATTTACAGAATTGGATAGGCCTAGTGGTCAGCCATGTGTTGAAACGAAGGAGTTTGATCTTGTCCGCAACATGCTAATAGCTGCCATTGAGGAGCGCTACCGAGATGCTGCTCAATGGAGGGACAAACTCAACCTACTTCGGGCTAAAAGGAACTTGGCCTAA 987 44.38 MGSLQGPVICPTIRAKQAGFHTIPVNGPLMAVRLHRSEFWGFKGMIGSKSTKVAYRYDPMNLRKFGIVHCTFSSSSDGSGSTAENFNQNDEDYVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNHPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSALLMAAVRNVQIARPTLYQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLTKIGSETEYVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMKIVESAKLSLQAPGSDGLLFTELDRPSGQPCVETKEFDLVRNMLIAAIEERYRDAAQWRDKLNLLRAKRNLA 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 557236 560819 + Conep20aG0013200.1 Cone20ag0125 460029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0125 328 Gene3D Bifunctional nuclease domain 127 265 IPR036104 GO:0004518(InterPro)
Cone20ag0125 328 Pfam Bifunctional nuclease domain 142 256 IPR003729 GO:0004518(InterPro)
Cone20ag0125 328 SUPERFAMILY Hypothetical protein TM0160 123 261 IPR036104 GO:0004518(InterPro)
Cone20ag0125 328 PANTHER VON HIPPEL-LINDAU PROTEIN 22 322 - GO:0005634(PANTHER)|GO:0016567(PANTHER)|GO:0030891(PANTHER)
Cone20ag0125 328 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 123 258 IPR003729 GO:0004518(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0875 Cone-Chr8:8610471 Cone20ag0125 Cone-Chr20:557236 7.61E-27 transposed
Cone17ag1356 Cone-Chr17:9475939 Cone20ag0125 Cone-Chr20:557236 6.39E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g989 Blo01g01576 . Bda01g00517 . Bpe02g00374 . . Bma01g02338 . . Cma01g01929 Cma09g00139 Car01g01506 . . Cpe06g00097 . . . . . . . . . . . . . . . . . . Cone20ag0125 Lsi04g01696 Csa03g04237 Chy04g00478 . . . . . . . . . . Cmo01g01992 Cmo09g00135 . . . Car09g00124 . Cpe02g00108 . . . . . . . Cla05g01915 Cam05g2052 Cec05g2063 Cco05g2116 . Cmu05g1923 Cre05g2046 . . . Cme04g00530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005080 2 4 0 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 4 1 1 41