Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0126 ATGCTGAATGAAGGTTTCGACGGATCTGCTGGAAATGACGAGAAAAGAGAAAGGAAAACTGATTTTGAAGTCTCGGAAGATGAAAAGAAGTCCAGAATAGGGAAGTTCAAGAAGAAAGCACTTAATGCCTCTAGTAAATTCAGGCATTCGCTCAGGAAAAAGAGCAAGAGAAAAATCGGCGGTTCAAGCAACTCTGTTTTGATCGAGGACGTTCGAGATATTGAGGAGCTGCGTGCTGTTGAAGATTTTCGACTACCACTGAGCATGGATGAGTTACTACCTCCAAGACACGATGATTACCGTACATTGTTGAGGCAAGGAAGTTTGGTATTGAGAAAGCAAAGCAAATGTGGATCAACATGCTTCAATGGAGGAGAGATTTCGGATTTTGAGTACAGTGAATTAAGTGAAGTTCTCGAGTGCTATCCTCAGGGTTATCATGGTGTGGATAAGGAGGGAAGGCCTGTTTATATTGAAAGACTAGGAAAAGTAGATCCTAGCAAGCTGATGCAAGTGACCACTCTCAAACGATATGTAAGATATCATGTTAAGGAATTCGAAAGGAGTCTTTCCATTAAGTTTCAAGCTTGCTCTATTGCTGCCAAGAGATACATTGATTCCAGCACCACAATTTTAGACGTTCAAGGCCTAAAGATTGATAATGACAACTATCCTGAGACACTTTATAGAATGTTTGTCATTAATGATGCTGGCCCTGGTTTTAAGTTGCTATGGAATTCCGTGAAGTCTTTTCTGGATCCCAAAACTGCTTCTAAGATACATGTCCTTGGTTACAAGTACCAGAACAAGTTACTTGAAATAATTGATTCCAGTGAGCTGCCAGAATTTCTGGGTGGTACCTGTACCTATGCTGATACTGGAGGCTGTTTGAGATCTGATAAGGGGCCATGGAATGATCCAGACACATTAAAGATGATTTTTGGTGGTAAAGCACAATGCCCCAGAACAATAGTAACAGTTTCAAACTGTGAAGGGAGGGTGGTTGTTTGTGATAAGGCATGCATAAAGATGATAAAAGGCGGTGACACATCTACAGCAGAATCAGGTTCTGAAGCTGAAGAAATTGCATCTTCCAAAGCTATTAAGAGCTATGCAACGCCTAGTTTAAACTCTGCTAATAAAATGGGTGGCAAAGTGAACCATACTGATGGTTTCTCAGAGAGTCCAGAAAATGTTCCTTTGGTTGACACGGTTGTGGATCCAGTATGTGAATTGCATTGGAATACATCTTCTGCTGGAGGGAATCCTTTGCCAAGTCCGGAGAAAGCTCTAGAGGGTATGTGTGCTCATATCTGGGCTATGATAGTGACCTTTTGCATTACCCTTTTCGCTCTCGTTCAATCAGCAGCTTTCCGTATGATTAAGATAATTCCTGCTTCTGTCTTCTTTCCTACTCTATCCATTCTTGACATTAATCTTGACTCAAATATGGAGGAGTCTGATGCTTCTACTAAAGCTCTTGAACCTTTTAAGGAAGATTTCTTATCATATGCTTCACAAAAAATGTGTGAGCTTGAGGAGAGGGTAAATATGCTAGAGGCAAGGCCATCCCAGATGCCCTTTGAGAAAGAGGAATTGCTGAATGCCGCTATATATCGCGTGGATGCACTAGAAGCAGAACTCATCTCTACAAAGAAGGCTTTTCATGAAGCTTTAATGAAGCAAGGGGAACTTCTGGCTTTCATAGATAGGCAAGAAGCTGCCAGGTGCCGGGTAAAGAAATTCAGTAGTAATCTGAAGGCCTTCTGCTATGTGTGCATACGTGTGGCTGCTTTTGTGGAGTGA 1806 41.64 MLNEGFDGSAGNDEKRERKTDFEVSEDEKKSRIGKFKKKALNASSKFRHSLRKKSKRKIGGSSNSVLIEDVRDIEELRAVEDFRLPLSMDELLPPRHDDYRTLLRQGSLVLRKQSKCGSTCFNGGEISDFEYSELSEVLECYPQGYHGVDKEGRPVYIERLGKVDPSKLMQVTTLKRYVRYHVKEFERSLSIKFQACSIAAKRYIDSSTTILDVQGLKIDNDNYPETLYRMFVINDAGPGFKLLWNSVKSFLDPKTASKIHVLGYKYQNKLLEIIDSSELPEFLGGTCTYADTGGCLRSDKGPWNDPDTLKMIFGGKAQCPRTIVTVSNCEGRVVVCDKACIKMIKGGDTSTAESGSEAEEIASSKAIKSYATPSLNSANKMGGKVNHTDGFSESPENVPLVDTVVDPVCELHWNTSSAGGNPLPSPEKALEGMCAHIWAMIVTFCITLFALVQSAAFRMIKIIPASVFFPTLSILDINLDSNMEESDASTKALEPFKEDFLSYASQKMCELEERVNMLEARPSQMPFEKEELLNAAIYRVDALEAELISTKKAFHEALMKQGELLAFIDRQEAARCRVKKFSSNLKAFCYVCIRVAAFVE 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 561561 565810 + Conep20aG0013300.1 Cone20ag0126 460030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0126 601 MobiDBLite consensus disorder prediction 9 34 - -
Cone20ag0126 601 MobiDBLite consensus disorder prediction 1 58 - -
Cone20ag0126 601 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 14 572 IPR051026 -
Cone20ag0126 601 SMART sec14_4 134 289 IPR001251 -
Cone20ag0126 601 MobiDBLite consensus disorder prediction 35 58 - -
Cone20ag0126 601 CDD SEC14 135 287 IPR001251 -
Cone20ag0126 601 Gene3D - 124 322 IPR036865 -
Cone20ag0126 601 SUPERFAMILY CRAL/TRIO domain 133 312 IPR036865 -
Cone20ag0126 601 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 134 292 IPR001251 -
Cone20ag0126 601 Pfam CRAL/TRIO domain 140 286 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0126 K26544 - - gmx:100812774 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1356 Cone-Chr17:9475939 Cone20ag0126 Cone-Chr20:561561 8.85e-316 dispersed
Cone20ag0126 Cone-Chr20:561561 Cone8ag1211 Cone-Chr8:10274433 1.03E-191 dispersed
Cone12ag1161 Cone-Chr12:9242558 Cone20ag0126 Cone-Chr20:561561 6.03E-112 wgd
Cone20ag0126 Cone-Chr20:561561 Cone4ag1930 Cone-Chr4:13658176 3.71E-194 wgd
Cone20ag0126 Cone-Chr20:561561 Cone7ag1842 Cone-Chr7:11961413 1.20E-127 wgd
Cone20ag0126 Cone-Chr20:561561 Cone8ag1210 Cone-Chr8:10270462 3.47E-128 wgd
Cone20ag0126 Cone-Chr20:561561 Cone9ag1571 Cone-Chr9:11324351 7.60E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1930 . Cone17ag1356 Cone20ag0126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00398 Cam11g0444 Cec11g0439 Cco11g0431 Clacu11g0567 Cmu11g0423 Cre11g0908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054888 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1