Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0127 ATGTCTCTTCTTAACAAGGTTCTTTCATCCTGTAGATCCTCACGAGCACTTTCTGTAATAGCCAGTCACGTTCCAGCGGGCACTCCAAATATTGATAATGCTCATCCCCAGAGAAGTTATCAAGCCGTACTCGCTGCAACACAAGAAATGGGCATAGGAAAGGACGGGAAGCTTCCATGGAGTCTGCCTTCTGATCTAAAATTCTTCAAGCAGCTCACAGTCTCTACATCCGATCCCAAAACAAAGAAGAACGCCGTCATAATGGGCCGGAAAACTTGGGCCAGCATCCCTATTACGTACAGGCCACTACCCAATCGTTTAAACATTGTGTTGACCCGTTCTATGAGTCTCGACATCACAGCTTCTAATGACGTTTTGACATGTGGAAGCCTCCCATTGGCTCTGAAGTTACTGGCAGAGCCTCCTTATTCCTTCTCAATAGAGAAAGTGTTTGTCATTGGAGGTGGGGAGGTATTGAAGGAAGCACTGAATGGTCCAGGATGTGAAGCCATCCATGTTACTGAAATTGAGACAGACATTGAATGCGATACTTTTGTTTCTAGGATTGACTTGTCTGTGTTTAAATTGCACTACTCATCTGGACTAGTTGTGGAAAATAATGTTCGATTCTGCTTTAAGACTTATGTTCGTGCAGTAGAGAACTGA 666 44.14 MSLLNKVLSSCRSSRALSVIASHVPAGTPNIDNAHPQRSYQAVLAATQEMGIGKDGKLPWSLPSDLKFFKQLTVSTSDPKTKKNAVIMGRKTWASIPITYRPLPNRLNIVLTRSMSLDITASNDVLTCGSLPLALKLLAEPPYSFSIEKVFVIGGGEVLKEALNGPGCEAIHVTEIETDIECDTFVSRIDLSVFKLHYSSGLVVENNVRFCFKTYVRAVEN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 566034 567243 + Conep20aG0013400.1 Cone20ag0127 460031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0127 221 PANTHER DIHYDROFOLATE REDUCTASE 39 218 IPR012259 GO:0004146(PANTHER)|GO:0004146(InterPro)|GO:0005739(PANTHER)|GO:0046452(PANTHER)|GO:0046654(InterPro)|GO:0046654(PANTHER)|GO:0046655(PANTHER)|GO:0050661(PANTHER)|GO:0050661(InterPro)
Cone20ag0127 221 SUPERFAMILY Dihydrofolate reductase-like 39 217 IPR024072 -
Cone20ag0127 221 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 51 73 IPR017925 GO:0004146(InterPro)
Cone20ag0127 221 Gene3D Dihydrofolate Reductase, subunit A 24 218 IPR024072 -
Cone20ag0127 221 Pfam Dihydrofolate reductase 42 217 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone20ag0127 221 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 39 217 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone20ag0127 221 CDD DHFR 42 216 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone20ag0127 221 PRINTS Dihydrofolate reductase signature 149 163 - -
Cone20ag0127 221 PRINTS Dihydrofolate reductase signature 65 73 - -
Cone20ag0127 221 PRINTS Dihydrofolate reductase signature 86 97 - -
Cone20ag0127 221 PRINTS Dihydrofolate reductase signature 51 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0127 K13998 - - rcu:8275764 252.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0127 Cone-Chr20:566034 Cone3ag1172 Cone-Chr3:30378634 2.13E-75 dispersed
Cone12ag1160 Cone-Chr12:9232421 Cone20ag0127 Cone-Chr20:566034 1.39E-43 wgd
Cone20ag0127 Cone-Chr20:566034 Cone8ag1209 Cone-Chr8:10262355 7.35E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016208 2 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8