Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0131 ATGGATTCTTGCTCTGCGACTTTGAACGCTAATGGTCACCCTGGAAGATTTAGCAATGGTTCTGGATTTAACAAGCTTTCGAGTGTCCAGCTATGGAGGAGGAATTTGAAATCTGAGAGCAGGGCTAGTAGAAAGCTTAACAAGCGTGGAGCTGTCCTTTCTGTTCTGACATCGGATATCCGCGAAGAGACTGCGAATTTCCAGGCACCGATATCTGAGACACCTCAAGCAGATCCAAGAAATGTAGTTTCTATCATCCTTGGCGGAGGTGCTGGAACTCGACTCTTTCCTCTTACAAGTAGAAGAGCTAAACCAGCAGTACCAATAGGAGGATGCTACAGGCTTATTGATATTCCTATGAGCAACTGCATCAACAGTGGTATTAAAAAGATATTCGTTTTGACCCAGTTTAATTCTTTTTCCCTTAATCGTCATCTTGCTCGAACTTATAACCTTGGCAATGGTGTCAACTTTGGAGACGGATTTGTTGAGGTTTTGGCTGCTACTCAGACACCGGGAGAAACAGGGAAGAAATGGTTCCAAGGCACTGCTGATGCTGTTAGGCAATTCATATGGGTCTTTGAGGATGCTAAGAATAAGAATGTGGACAATATAATGATATTGTCAGGGGATCATCTTTACCGCATGAACTATATGGATTTCGTGCAGAGGCATGTTGACACCAATGCTGATATTACAGTTTCATGCCTTCCCATGGATGATAGCCGTGCATCTGATTATGGATTAATGAAGATTGATAACACTGGGCGTATTGTCCAATTTGCTGAAAAACCAGAGGGTGCTGACCTGAAATCAATGCAAGTTGACAATACTCTTCTAGGGTTATCGAAGCAAGATGCTGCGAGAAATCCTTATATTGCATCCATGGGAGTTTATGTGTTTAAAACTGATGTCCTTTTAAAGCTTTTAAGATGGAGCTACCCTTCGTGCAATGACTTTGGCTCTGAGATTATTCCATCTGCCGTGAAAGATCACAATGTCCAAGCATATTTGTTCAACGATTACTGGGAGGACATTGGAACCATTAAGTCTTTTTTTGATGCCAACTTAGCCCTCACAGAACAGCCCCCAAAATTTCAATTCTACGATCCAAAGACTCCTTTCTATACATCTCCTCGATTCTTGCCTCCGACCAAAGTTGAAAAATGCAGGATTGTAGACGCAATAATATCTCACGGTTGCTTTTTGAGAGAATGTAGTGTTGAACACTCTATAGTTGGTGTGCGTTCACGTTTGGAGTATGGTGTGGAATTTAAGGACACTATGATGATGGGTGCAGATTACTACCAGACTGAATCAGAGATTGCATCTCTGTTAGCTGAAGGAAAGGTTCCAATCGGTGTTGGACAGAACACCAAGATCAGGAATTGCATCATTGACAAGAACGCCAAGATCGGAAAAAACGTGATCATTGCAAATGGCGATGGTGTTGAAGAAGCAGAGAGACCAAAGGAGGGATTCTACGTTAGATCTGGAATCACGGTGATATTGAAGAATGCAACGATCAAAGATGGAACGGTTATTTAA 1548 42.18 MDSCSATLNANGHPGRFSNGSGFNKLSSVQLWRRNLKSESRASRKLNKRGAVLSVLTSDIREETANFQAPISETPQADPRNVVSIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDIPMSNCINSGIKKIFVLTQFNSFSLNRHLARTYNLGNGVNFGDGFVEVLAATQTPGETGKKWFQGTADAVRQFIWVFEDAKNKNVDNIMILSGDHLYRMNYMDFVQRHVDTNADITVSCLPMDDSRASDYGLMKIDNTGRIVQFAEKPEGADLKSMQVDNTLLGLSKQDAARNPYIASMGVYVFKTDVLLKLLRWSYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFQFYDPKTPFYTSPRFLPPTKVEKCRIVDAIISHGCFLRECSVEHSIVGVRSRLEYGVEFKDTMMMGADYYQTESEIASLLAEGKVPIGVGQNTKIRNCIIDKNAKIGKNVIIANGDGVEEAERPKEGFYVRSGITVILKNATIKDGTVI 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 585547 589243 + Conep20aG0013800.1 Cone20ag0131 460035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0131 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 88 107 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Cone20ag0131 515 SUPERFAMILY Nucleotide-diphospho-sugar transferases 82 476 IPR029044 -
Cone20ag0131 515 Pfam Nucleotidyl transferase 84 361 IPR005835 GO:0009058(InterPro)
Cone20ag0131 515 CDD LbH_G1P_AT_C 383 509 - -
Cone20ag0131 515 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 37 515 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Cone20ag0131 515 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 68 380 IPR029044 -
Cone20ag0131 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 179 187 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Cone20ag0131 515 NCBIfam glucose-1-phosphate adenylyltransferase 82 479 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Cone20ag0131 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 294 304 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Cone20ag0131 515 Gene3D Hexapeptide repeat proteins 381 515 - -
Cone20ag0131 515 FunFam Glucose-1-phosphate adenylyltransferase 381 515 - -
Cone20ag0131 515 SUPERFAMILY Trimeric LpxA-like enzymes 377 515 IPR011004 -
Cone20ag0131 515 CDD ADP_Glucose_PP 85 346 - -
Cone20ag0131 515 FunFam Glucose-1-phosphate adenylyltransferase 64 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0131 K00975 - - mdm:114826430 850.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0131 Cone-Chr20:585547 Cone8ag1355 Cone-Chr8:10857989 2.05E-178 dispersed
Cone10ag0975 Cone-Chr10:6554462 Cone20ag0131 Cone-Chr20:585547 6.50E-236 transposed
Cone7ag0226 Cone-Chr7:959738 Cone20ag0131 Cone-Chr20:585547 1.06E-237 transposed
Cone20ag0131 Cone-Chr20:585547 Cone4ag1925 Cone-Chr4:13647150 5.91E-297 wgd
Cone20ag0131 Cone-Chr20:585547 Cone7ag1838 Cone-Chr7:11950518 2.00E-304 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g977 Blo01g01573 . Bda01g00521 Bda03g00267 Bpe02g00380 Bpe04g00221 Bma04g00215 Bma01g02331 . . Cma01g01921 Cma09g00145 Car01g01502 . . Cpe06g00101 . . . . . . . . . . . . . . . Cone4ag1925 Cone7ag1838 . Cone20ag0131 Lsi04g01691 Csa03g04231 Chy04g00484 . . . . . . . . . . Cmo01g01984 Cmo09g00143 . . . Car09g00129 . Cpe02g00115 . . . . . . . Cla05g01921 Cam05g2058 Cec05g2071 Cco05g2122 Clacu05g2052 Cmu05g1929 Cre05g2052 . . . Cme04g00543
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001022 2 5 3 5 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 2 3 83