Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0133 ATGGCGGCGATTAGTGGTCACTGTTTTGTTCGATCGGAGAAACCTTCACTTTCTTCTCTGTTTTCGTCTCTCTCCGGTCGGAAGCTGTTCCGATCTTCTAATGTTTCCGGAAATTTCTCTAATGTGACCGTCCCGTCTCGAGCTGGCTTTGTGGCTCCTCATCCTAGAATCTCATGCCAGGCTTCGTCTGCTACTTCACCAGCTTCGTCCGCTACTTCACCCGCTTCGTCCGGCACTGAAAAAGAAAAATCAGGGCTGAAGGATTTTCTTCACATTAACGATTTTGATAAATCCACCATTTTGGAGATCTTAAACCGTGCTCTAGAAGTCAAGGCATTGCTTAAGTCAGGAGATAGGACTTTTCTCCCCTTTAAAGGGAAAACAATGGCTATGATCTTTGCTAAACCATCTATGAGAACAAGGGTTTCGTTTGAGACTGGTTTTTCCTTACTTGGGGGACATGCTATATATTTGGGACCTGATGACATTCAGATGGGAAAGCGAGAGGAAACTCGGGATGTTGCTCGTGTTTTATGTCGCTATAACGATATAATTATGGCACGTGTCTTCAGTCATCAGGACATTCTTGATCTCGCTAAATATGCATCCATACCCGTCATCAATGGCTTGACTGACTACAACCATCCCTGCCAAATAATGGCTGATGCCCTCACAATAATCGAACACATAGGAAACTTGGAAGGAACAAAGGTTGTATATGTTGGAGATGGAAATAATATTGTGCACTCTTGGTTATTACTGGCGGCAGTTATACCTTTCCACTTTGTCTGTGCCTGCCCTAAAGGTTTCGAGCCTGATAAGGAAACTGTAGAGAAGGCTCGCCTTGCTGGAATTAGCAAGATTGAGATAACTAATGATCCCAAAGAAGCAGTTAAAGGGGCTGATGTTATATACTCTGATGTCTGGGCAAGCATGGGCCAAAAAGAAGAGGCTGCATATCGTCGCCAAGTGTTTCAAGGGTTTCAGGTTGATGAGAATCTGATGAAGATAGCTGGCCCAAAAGCTTATTTCATGCATTGTTTACCAGCAGAAAGAGGAGTGGAGGTGACGGATGCTGTTATCGAAGCTCCCAACTCAATTGTGTTCCAGCAAGCTGAGAATCGCATGCATGCACAGAACGCCATCATGCTCCACCTGCTTGGCTTGTGA 1170 44.79 MAAISGHCFVRSEKPSLSSLFSSLSGRKLFRSSNVSGNFSNVTVPSRAGFVAPHPRISCQASSATSPASSATSPASSGTEKEKSGLKDFLHINDFDKSTILEILNRALEVKALLKSGDRTFLPFKGKTMAMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDVARVLCRYNDIIMARVFSHQDILDLAKYASIPVINGLTDYNHPCQIMADALTIIEHIGNLEGTKVVYVGDGNNIVHSWLLLAAVIPFHFVCACPKGFEPDKETVEKARLAGISKIEITNDPKEAVKGADVIYSDVWASMGQKEEAAYRRQVFQGFQVDENLMKIAGPKAYFMHCLPAERGVEVTDAVIEAPNSIVFQQAENRMHAQNAIMLHLLGL 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 592636 594793 + Conep20aG0014000.1 Cone20ag0133 460037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0133 389 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 86 388 IPR024904 GO:0004585(InterPro)|GO:0006591(InterPro)
Cone20ag0133 389 FunFam ornithine carbamoyltransferase, chloroplastic 87 222 - -
Cone20ag0133 389 Gene3D Aspartate/ornithine carbamoyltransferase 218 374 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 FunFam Ornithine carbamoyltransferase 223 374 - -
Cone20ag0133 389 MobiDBLite consensus disorder prediction 60 82 - -
Cone20ag0133 389 MobiDBLite consensus disorder prediction 60 80 - -
Cone20ag0133 389 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 75 388 - GO:0004585(PANTHER)|GO:0019240(PANTHER)|GO:0042450(PANTHER)|GO:0043231(PANTHER)
Cone20ag0133 389 Gene3D Aspartate/ornithine carbamoyltransferase 89 383 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 86 388 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 234 385 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Ornithine carbamoyltransferase signature 131 145 IPR002292 GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Ornithine carbamoyltransferase signature 204 218 IPR002292 GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Ornithine carbamoyltransferase signature 304 314 IPR002292 GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Ornithine carbamoyltransferase signature 164 177 IPR002292 GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Ornithine carbamoyltransferase signature 366 377 IPR002292 GO:0016743(InterPro)
Cone20ag0133 389 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 87 228 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 NCBIfam ornithine carbamoyltransferase 87 387 IPR002292 GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 215 226 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 340 349 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 352 375 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cone20ag0133 389 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 133 152 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0133 K00611 - - mdm:103428642 596.275
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g970 Blo01g01571 . Bda01g00522 . Bpe02g00382 . . Bma01g02329 . . Cma01g01919 Cma09g00147 Car01g01500 . . Cpe06g00103 . . . . . . . . . . . . . . . . . . Cone20ag0133 Lsi04g01689 Csa03g04229 Chy04g00486 . . . . . . . . . . Cmo01g01982 Cmo09g00145 . . . Car09g00131 . Cpe02g00117 . . . . . . . Cla05g01923 Cam05g2060 Cec05g2073 Cco05g2124 Clacu05g2054 Cmu05g1931 Cre05g2054 . . . Cme04g00545
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 35