Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0139 ATGGGACCTTTTCAGCTGCATGCCATTTTATCAATGGGAGAGGATCACAAGATGCATGATCACCAGGAACCTCGTGTATGGTCCTCACCAGGAGGAGGACGAGAAATTGATATAGGAAAGCAAATATTTTGCAATAGATCTTTGAATATGAAGAATATTGTTGCTGTAGGTTTTGATATGGATTACACATTAGCACAATACAAGCCTGAAACTTTTGAATCTCTCGCATACGAAGGCACAATAAGAAAATTGGTCTATGATTTGGGATATCCTTCAGAGCTGCTCGGGTGGTCATTTGATTGGAAATATATGGTCAGAGGCTTGGTACTTGATAAAAAGCGAGGCAACATCTTGAAGATGGATAGGCACAAGTATGTGAAAGTAGCATATCATGGATTCAAAGAGCTGTCTAAGGAAGATAAAGTCGAGACCTATGGCAACACTCTAGTGCAGGATTCTTTTGATGAGCCTGATTATGCTCTCATCGATACACTTTTTTCACTAGCTGAAGCGTACTTGTTTGCCCAACTGGTTGACTTTAAGGATAATAATCCTGGAAAGGTTCCAGAGGGTGTTGATTACTCTCGTATGTACAGAGACGTTCGAGCTGCTGTTGATTTGTGCCACCGAGATGGAACTTTAAAGCAAATGGTTGCAAAAGACCCTAAAAGGTATATCAATGAAGATACCTCTATAGTACCCATGTTCAAAATGCTCAGAGATTCTGGTCGCTCTACTTTTCTGGTCACAAACAGTTTGTGGGATTATACGAACATTGTGATGAATTTCCTCTGTGATTCCCGCACAATGCGTGGTGATAAAAAATGTAATTTTGACTGGCTTCAGTACTTCGATATTGTCATCACCGGCAGTGCTAAACCAGGCTTTTTCCATGAGGACAATCGTGCCAATTTATTTGAGGTTGAACCCGTGTCAGGGATGCTGCGTAATACTGATAATGGCTCCCCTATACTGCAGGTTGGGGAAGATACTCTACTGGATTTATCATTAACAGGGCTGAGTAACATTTGTAGAGTTTTCCAGGGAGGAAATGTCAGGCATCTGCATAAAATACTTTCTATTGAATCAAGTTCCCAGGTTCTCTATGTTGGAGATCATATCTATGGAGATATATTGAGAAGTAAAAAGGTTCTTGGTATAATGTTTACTGCTAATGCTTTAAATCATAAGTATGTTTTTATGACAGGATTAGGGTGGAGAACAATGCTTGTTGTTCCAGAGCTTGAGAGGGAGGTTGAACTCCTTTGGGAATTGAGAAATACCCGCAAGCAACTTCGGTTATTGAGAACTGAACGGGATGCGATTGAAGACAAAATACAACATTTGAAGTGGTCCCTCAGGTTGGAAGATGTCAGTGATGCTGAGAAGCAGAAGTTATCTTCCCAACTAGATTGCTTGGAGTTTCACCGGGTTTGGGGGCAACTTATGAAGACCGGGTATCAGAATTCTCGCTTTGCTCATCAGGTTGAGAGATTTGCGTGTCTTTACACGAGCCAAGTAACCAATTTAAGCCTCTATTCTCCAGACAAATACTACAGACCGAGTGAAGATTTCATGCCCCATGAATTTGGCATCGTTCCTTTTGAATAG 1611 41.03 MGPFQLHAILSMGEDHKMHDHQEPRVWSSPGGGREIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYPSELLGWSFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKEDKVETYGNTLVQDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPGKVPEGVDYSRMYRDVRAAVDLCHRDGTLKQMVAKDPKRYINEDTSIVPMFKMLRDSGRSTFLVTNSLWDYTNIVMNFLCDSRTMRGDKKCNFDWLQYFDIVITGSAKPGFFHEDNRANLFEVEPVSGMLRNTDNGSPILQVGEDTLLDLSLTGLSNICRVFQGGNVRHLHKILSIESSSQVLYVGDHIYGDILRSKKVLGIMFTANALNHKYVFMTGLGWRTMLVVPELEREVELLWELRNTRKQLRLLRTERDAIEDKIQHLKWSLRLEDVSDAEKQKLSSQLDCLEFHRVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFGIVPFE 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 626607 631137 - Conep20aG0014700.1 Cone20ag0139 460043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0139 536 Pfam 5' nucleotidase family 42 386 IPR008380 -
Cone20ag0139 536 Pfam 5' nucleotidase family 404 530 IPR008380 -
Cone20ag0139 536 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 18 529 IPR008380 GO:0008253(PANTHER)
Cone20ag0139 536 PIRSF NT5C2 23 389 IPR016695 -
Cone20ag0139 536 PIRSF NT5C2 398 534 IPR016695 -
Cone20ag0139 536 FunFam Cytosolic purine 5-nucleotidase 202 441 - -
Cone20ag0139 536 CDD HAD_cN-II 43 505 - -
Cone20ag0139 536 Coils Coil 425 445 - -
Cone20ag0139 536 NCBIfam HAD-IG family 5'-nucleotidase 42 432 IPR008380 -
Cone20ag0139 536 Gene3D - 38 85 IPR023214 -
Cone20ag0139 536 Gene3D - 204 441 IPR023214 -
Cone20ag0139 536 SUPERFAMILY HAD-like 40 531 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0684 Cone-Chr15:3674328 Cone20ag0139 Cone-Chr20:626607 1.84E-62 transposed
Cone17ag1342 Cone-Chr17:9414274 Cone20ag0139 Cone-Chr20:626607 2.79E-258 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48