Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0141 ATGCATTATCTCCTTACCTTGTTCTCCTTACCAATTTTTACTTCCAAGTTACATAAAAGCATGTCTGATCAAGAAAATGGTTCACTTTGGCCCGAGCTAAAGCTTCCGGATGTTTTATTCACGGACAGTGTAAGAGAAGTCCATGCAAGAATCGAACATGAGTGGGATTCTCTCCAACGGTCAGCTTGCCAAACAGCAGCTGGAAGAGCCCTATGGAAGCATGTAACTAATGATCCACTTGCAGCCTTACTTGCAGGGGAGACTTACCTGAGAAGCTTCTACGAGAAGATAAAGAAAGATCGAATGAATAATGCAAGAGAAACTTCTGGAGTGATCCTTGCTGTTCGTACCCTCTGGTTTGACTCGAAACTCGAAAGTGCTCTCACTTCCTTTACTAGCAGAGGTTCACAGGTTGTTCTCCTTGGCGCAGGTATGGATGCAAGGGCATACCGATTGAGCTGCTTGAAGGAATGTGATGTCTATGAAGTTGATTTTCCAGAAGTATTGCAAGTGAAATCCAGTCTTGTTAAGGAAGGAATGGAATCTACAGAGGACCAGCATCTAGTGATGATGGCAAAATCCCTAACTAGAGTAGCGGCTGACATCAGAGGCATCGACTGGCTTGAAAAGCTTCAAGCGGCAGGGTTTGTACCAGAGAAAAACACAGTGTGGGTTCTTGAAGGAATCCTCTACTACCTTTCCCACTCTCAGGCCATGCAAGTTTTGAAAATTATAGCTGACAAGTGCACCATTACCCAGACAGTTCTCTTAGCAGATTTCATGAATAAATCATCAACAACACTTTCAAATTCTATGTTCCACTTCTATAGTGATTGGCCTGATCAACTCTTGCCATCTATTGGCTTTTCTAATGTCAAACTGTCACAGATTGGTGATCCAGATGCTCACTTTGGGCTTATGCATGATCCAATGAATCTGTTCAACAAACTGCGTAGCTTGCCTAGGTCAGTACAAACCAACCCTGATGATGGAACACCATGCTGTCGCTTGTATCTGGTGCAGGCATCAGGATCGCCAAATTTAACTGATCCATAG 1056 43.56 MHYLLTLFSLPIFTSKLHKSMSDQENGSLWPELKLPDVLFTDSVREVHARIEHEWDSLQRSACQTAAGRALWKHVTNDPLAALLAGETYLRSFYEKIKKDRMNNARETSGVILAVRTLWFDSKLESALTSFTSRGSQVVLLGAGMDARAYRLSCLKECDVYEVDFPEVLQVKSSLVKEGMESTEDQHLVMMAKSLTRVAADIRGIDWLEKLQAAGFVPEKNTVWVLEGILYYLSHSQAMQVLKIIADKCTITQTVLLADFMNKSSTTLSNSMFHFYSDWPDQLLPSIGFSNVKLSQIGDPDAHFGLMHDPMNLFNKLRSLPRSVQTNPDDGTPCCRLYLVQASGSPNLTDP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 634987 637055 - Conep20aG0014900.1 Cone20ag0141 460045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0141 351 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE YKTD-RELATED 43 342 - -
Cone20ag0141 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 59 339 IPR029063 -
Cone20ag0141 351 NCBIfam SAM-dependent methyltransferase 72 263 IPR011610 GO:0008168(InterPro)
Cone20ag0141 351 Gene3D Vaccinia Virus protein VP39 51 307 IPR029063 -
Cone20ag0141 351 Pfam Leucine carboxyl methyltransferase 62 245 IPR007213 GO:0008168(InterPro)|GO:0032259(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0141 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1340 Cone-Chr17:9406812 Cone20ag0141 Cone-Chr20:634987 1.26E-234 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g943 . . . . . . . . . Cmo12g00420 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1340 Cone20ag0141 . . . . . Blo18g00816 . Bda01g01492 Bpe02g01688 . Bma01g00764 . . . . Cma12g00471 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014564 1 0 1 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 0 1 0 1 20