Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0156 | ATGTCAAGTGGAATTGTGGACTCATCAAGCAATCCACCCCCAAACTCTTCTGCTAACTTTGAGTGTAATATCTGCTTCGAGTTAGCTCAAGATCCTATCGTAACCTTATGCGGCCATCTTTTCTGCTGGCCTTGCGTTTACCAGTGGCTCCACTTTCACACTCACTCTCATCAATGCCCGGTTTGCAAAGCCGTGGTTGAAGAAGACAAGTTGGTCCCACTATACGGTAGGGGAAAAACATCAACCGACCCCAGGTTGAAATCAGTTAGTAATCCGGGTATTCATATTCCCAGCCGTCCAGCCGGTCTGAGACCTGAGACAGTTCCTCCTCCTCCTCCACCTGAGTTTGGGTTCAATCAAGCTTTGGGTGCTTATGTCCCCTCTTTGTTTAGCCCTCAGGTTCATGGATATGCTAGTCTTTATGGTCCGGTTGGTGGATTCCGTTATGGGTTTCGTCATTCATTTCATGGCGGTTATGTTCATGGATACTATAGGAATAGTCGTCATTATGGACGACAGGATTCCCATCTGAAGAAAATTCTCTTGTTTCTTGTGTTTTGCATGCTTCTTCTTCTTCTTTCACGGTAG | 588 | 46.09 | MSSGIVDSSSNPPPNSSANFECNICFELAQDPIVTLCGHLFCWPCVYQWLHFHTHSHQCPVCKAVVEEDKLVPLYGRGKTSTDPRLKSVSNPGIHIPSRPAGLRPETVPPPPPPEFGFNQALGAYVPSLFSPQVHGYASLYGPVGGFRYGFRHSFHGGYVHGYYRNSRHYGRQDSHLKKILLFLVFCMLLLLLSR | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 683521 | 684776 | + | Conep20aG0016400.1 | Cone20ag0156 | 460060 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0156 | 195 | Pfam | RING-type zinc-finger | 22 | 60 | IPR027370 | - | |
Cone20ag0156 | 195 | CDD | RING-HC_AtRMA-like | 20 | 64 | - | - | |
Cone20ag0156 | 195 | SMART | ring_2 | 22 | 62 | IPR001841 | - | |
Cone20ag0156 | 195 | ProSitePatterns | Zinc finger RING-type signature. | 37 | 46 | IPR017907 | - | |
Cone20ag0156 | 195 | ProSiteProfiles | Zinc finger RING-type profile. | 22 | 63 | IPR001841 | - | |
Cone20ag0156 | 195 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 14 | 110 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Cone20ag0156 | 195 | SUPERFAMILY | RING/U-box | 18 | 75 | - | - | |
Cone20ag0156 | 195 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 76 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0156 | Cone-Chr20:683521 | Cone8ag0084 | Cone-Chr8:438507 | 3.49E-61 | dispersed | |
Cone17ag1319 | Cone-Chr17:9339349 | Cone20ag0156 | Cone-Chr20:683521 | 3.03E-114 | wgd | |
Cone20ag0156 | Cone-Chr20:683521 | Cone4ag1888 | Cone-Chr4:13476940 | 2.65E-70 | wgd | |
Cone20ag0156 | Cone-Chr20:683521 | Cone7ag1799 | Cone-Chr7:11780316 | 4.85E-70 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0156 | K10666 | - | rcu:8260936 | 216.468 |