Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0156 ATGTCAAGTGGAATTGTGGACTCATCAAGCAATCCACCCCCAAACTCTTCTGCTAACTTTGAGTGTAATATCTGCTTCGAGTTAGCTCAAGATCCTATCGTAACCTTATGCGGCCATCTTTTCTGCTGGCCTTGCGTTTACCAGTGGCTCCACTTTCACACTCACTCTCATCAATGCCCGGTTTGCAAAGCCGTGGTTGAAGAAGACAAGTTGGTCCCACTATACGGTAGGGGAAAAACATCAACCGACCCCAGGTTGAAATCAGTTAGTAATCCGGGTATTCATATTCCCAGCCGTCCAGCCGGTCTGAGACCTGAGACAGTTCCTCCTCCTCCTCCACCTGAGTTTGGGTTCAATCAAGCTTTGGGTGCTTATGTCCCCTCTTTGTTTAGCCCTCAGGTTCATGGATATGCTAGTCTTTATGGTCCGGTTGGTGGATTCCGTTATGGGTTTCGTCATTCATTTCATGGCGGTTATGTTCATGGATACTATAGGAATAGTCGTCATTATGGACGACAGGATTCCCATCTGAAGAAAATTCTCTTGTTTCTTGTGTTTTGCATGCTTCTTCTTCTTCTTTCACGGTAG 588 46.09 MSSGIVDSSSNPPPNSSANFECNICFELAQDPIVTLCGHLFCWPCVYQWLHFHTHSHQCPVCKAVVEEDKLVPLYGRGKTSTDPRLKSVSNPGIHIPSRPAGLRPETVPPPPPPEFGFNQALGAYVPSLFSPQVHGYASLYGPVGGFRYGFRHSFHGGYVHGYYRNSRHYGRQDSHLKKILLFLVFCMLLLLLSR 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 683521 684776 + Conep20aG0016400.1 Cone20ag0156 460060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0156 195 Pfam RING-type zinc-finger 22 60 IPR027370 -
Cone20ag0156 195 CDD RING-HC_AtRMA-like 20 64 - -
Cone20ag0156 195 SMART ring_2 22 62 IPR001841 -
Cone20ag0156 195 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Cone20ag0156 195 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Cone20ag0156 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 110 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone20ag0156 195 SUPERFAMILY RING/U-box 18 75 - -
Cone20ag0156 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 76 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0156 Cone-Chr20:683521 Cone8ag0084 Cone-Chr8:438507 3.49E-61 dispersed
Cone17ag1319 Cone-Chr17:9339349 Cone20ag0156 Cone-Chr20:683521 3.03E-114 wgd
Cone20ag0156 Cone-Chr20:683521 Cone4ag1888 Cone-Chr4:13476940 2.65E-70 wgd
Cone20ag0156 Cone-Chr20:683521 Cone7ag1799 Cone-Chr7:11780316 4.85E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0156 K10666 - rcu:8260936 216.468