Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0163 ATGAAGAACACATTATCTGATTTATTACCAGATCTCTCCTTGCAGTTAAGGATCAGCAGTCCACCCTCGTCACCGCCAGATTGGGAGGATGCTAAGTTTAAGGAAGATTATGGGTTTGTAAGAAGAGCACTACTACTCAACGTGAGTAGTATTAGTACTACTGATAGAAGCTCAACCACCACCACCACCACCACCACTTGTACAGATTCCGGTAGCAGTAGTACTACAGCTGGGAGTGATTTAATCGGTGGCCACGAAAACAGCTTGGCCACTCATTTCAACCACCAGCTTGTTGGTCATGATCATCATCAACATCCTAATGTTACAGCTGGGCCATCGTTGAGCTTGGGGTTTGAAATGGCAGATCATCATCATCAATATCGCCGTTTGAGTAATATGTTTCATCATCACGATCTCGTTCAAATGTCCAGATTGTCTAATAGTTATACCTGTTTTCACGATCAGCACCGACCTCGTATCAACGGTCTGGATCAATTCAAGAGAAGTGGAAGATCGTTGATTAATGGTGGTCATGTGAGAAGAAGCGTGAGAGCTCCAAGAATGAGGTGGACTTCAACCCTCCATGCTCATTTTGTGCACGCTGTTCACCTTCTCGGAGGCCATGAACGGGCAACACCAAAATCGGTGTTAGAGTTGATGAACGTGAAGGATCTCACACTAGCTCATGTCAAGAGTCACTTACAGATGTATAGAACAGTTAAGAGCACTGATCATAAAGGAACAGGTAGTGGTCAAGGACATATAGATATGGACATGAACCAGAAGATAGGGCTCTACCCACCACAAACAGAACTACAACAACAACAACAACCTCAATGGAGGGAATCATGGTTGTCATCAAACCAGAACGATGGTTTGTCCCTTATGGTCAGGACTAATGAAACCAAGGTAGAGGAAGCCAACGTTAACACGACAACATTAATTCATGCTTCCAAAAGTATGGGAGATATTTCATCCTTATCATTATCGTCATCCGACATGTTCGTCGATTTAGGGATCACTCTTGGAAGGAGCACGAGTTGCACGTCAGACGAGCTCACTCTTGTTTAA 1071 43.98 MKNTLSDLLPDLSLQLRISSPPSSPPDWEDAKFKEDYGFVRRALLLNVSSISTTDRSSTTTTTTTTCTDSGSSSTTAGSDLIGGHENSLATHFNHQLVGHDHHQHPNVTAGPSLSLGFEMADHHHQYRRLSNMFHHHDLVQMSRLSNSYTCFHDQHRPRINGLDQFKRSGRSLINGGHVRRSVRAPRMRWTSTLHAHFVHAVHLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDHKGTGSGQGHIDMDMNQKIGLYPPQTELQQQQQPQWRESWLSSNQNDGLSLMVRTNETKVEEANVNTTTLIHASKSMGDISSLSLSSSDMFVDLGITLGRSTSCTSDELTLV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 708742 710570 - Conep20aG0017100.1 Cone20ag0163 460067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0163 356 MobiDBLite consensus disorder prediction 54 78 - -
Cone20ag0163 356 Gene3D - 185 242 - -
Cone20ag0163 356 FunFam Myb family transcription factor 184 242 - -
Cone20ag0163 356 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 346 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cone20ag0163 356 Pfam Myb-like DNA-binding domain 187 238 IPR001005 -
Cone20ag0163 356 SUPERFAMILY Homeodomain-like 183 240 IPR009057 -
Cone20ag0163 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 239 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1658 Cone-Chr1:57777897 Cone20ag0163 Cone-Chr20:708742 6.53E-19 dispersed
Cone20ag0163 Cone-Chr20:708742 Cone8ag0489 Cone-Chr8:3447685 8.92E-33 dispersed
Cone17ag1309 Cone-Chr17:9308212 Cone20ag0163 Cone-Chr20:708742 1.46E-163 wgd
Cone20ag0163 Cone-Chr20:708742 Cone4ag1544 Cone-Chr4:11912283 3.50E-47 wgd
Cone20ag0163 Cone-Chr20:708742 Cone7ag1407 Cone-Chr7:10066318 7.31E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45556 PF00004 AAA 4.30E-42 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0163 - - - 0.0