Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0163 ATGAAGAACACATTATCTGATTTATTACCAGATCTCTCCTTGCAGTTAAGGATCAGCAGTCCACCCTCGTCACCGCCAGATTGGGAGGATGCTAAGTTTAAGGAAGATTATGGGTTTGTAAGAAGAGCACTACTACTCAACGTGAGTAGTATTAGTACTACTGATAGAAGCTCAACCACCACCACCACCACCACCACTTGTACAGATTCCGGTAGCAGTAGTACTACAGCTGGGAGTGATTTAATCGGTGGCCACGAAAACAGCTTGGCCACTCATTTCAACCACCAGCTTGTTGGTCATGATCATCATCAACATCCTAATGTTACAGCTGGGCCATCGTTGAGCTTGGGGTTTGAAATGGCAGATCATCATCATCAATATCGCCGTTTGAGTAATATGTTTCATCATCACGATCTCGTTCAAATGTCCAGATTGTCTAATAGTTATACCTGTTTTCACGATCAGCACCGACCTCGTATCAACGGTCTGGATCAATTCAAGAGAAGTGGAAGATCGTTGATTAATGGTGGTCATGTGAGAAGAAGCGTGAGAGCTCCAAGAATGAGGTGGACTTCAACCCTCCATGCTCATTTTGTGCACGCTGTTCACCTTCTCGGAGGCCATGAACGGGCAACACCAAAATCGGTGTTAGAGTTGATGAACGTGAAGGATCTCACACTAGCTCATGTCAAGAGTCACTTACAGATGTATAGAACAGTTAAGAGCACTGATCATAAAGGAACAGGTAGTGGTCAAGGACATATAGATATGGACATGAACCAGAAGATAGGGCTCTACCCACCACAAACAGAACTACAACAACAACAACAACCTCAATGGAGGGAATCATGGTTGTCATCAAACCAGAACGATGGTTTGTCCCTTATGGTCAGGACTAATGAAACCAAGGTAGAGGAAGCCAACGTTAACACGACAACATTAATTCATGCTTCCAAAAGTATGGGAGATATTTCATCCTTATCATTATCGTCATCCGACATGTTCGTCGATTTAGGGATCACTCTTGGAAGGAGCACGAGTTGCACGTCAGACGAGCTCACTCTTGTTTAA 1071 43.98 MKNTLSDLLPDLSLQLRISSPPSSPPDWEDAKFKEDYGFVRRALLLNVSSISTTDRSSTTTTTTTTCTDSGSSSTTAGSDLIGGHENSLATHFNHQLVGHDHHQHPNVTAGPSLSLGFEMADHHHQYRRLSNMFHHHDLVQMSRLSNSYTCFHDQHRPRINGLDQFKRSGRSLINGGHVRRSVRAPRMRWTSTLHAHFVHAVHLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDHKGTGSGQGHIDMDMNQKIGLYPPQTELQQQQQPQWRESWLSSNQNDGLSLMVRTNETKVEEANVNTTTLIHASKSMGDISSLSLSSSDMFVDLGITLGRSTSCTSDELTLV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 708742 710570 - Conep20aG0017100.1 Cone20ag0163 460067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0163 356 MobiDBLite consensus disorder prediction 54 78 - -
Cone20ag0163 356 Gene3D - 185 242 - -
Cone20ag0163 356 FunFam Myb family transcription factor 184 242 - -
Cone20ag0163 356 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 346 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cone20ag0163 356 Pfam Myb-like DNA-binding domain 187 238 IPR001005 -
Cone20ag0163 356 SUPERFAMILY Homeodomain-like 183 240 IPR009057 -
Cone20ag0163 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 239 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0163 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1658 Cone-Chr1:57777897 Cone20ag0163 Cone-Chr20:708742 6.53E-19 dispersed
Cone20ag0163 Cone-Chr20:708742 Cone8ag0489 Cone-Chr8:3447685 8.92E-33 dispersed
Cone17ag1309 Cone-Chr17:9308212 Cone20ag0163 Cone-Chr20:708742 1.46E-163 wgd
Cone20ag0163 Cone-Chr20:708742 Cone4ag1544 Cone-Chr4:11912283 3.50E-47 wgd
Cone20ag0163 Cone-Chr20:708742 Cone7ag1407 Cone-Chr7:10066318 7.31E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45556 PF00004 AAA 4.30E-42 CL0023 Cone TF