Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0166 ATGCAGGCCTTTGGCTGCCTTTTCCTTCTCCCTCTTTTGATACTTTTCTCTTCATCCTCTTCATATGCTCTCTCCGATGTCGAAGTTTCTTATATCGCACGCCGCCAGTTATTAAGCTTCGGCGAGAATCATTTAGTAACCCTCAACCCGAATTATCAGAATGTGGAGGATAATAACATAGAAGAGACTTTTGAAAATGAAAGGCTTAAAAGGGCTTACATTGCCCTCCAAGCATGGAAAAAGGCTATTTACTCGGACCCGTTTAACACAACAACTAATTGGGTGGGTACTGATGTGTGTGCGTATACAGGGGTTTTCTGCGCGGAGGCACTTGATGACCCGAAAGTGACCGTTGTTGCCGGAATTGATATTAACCATGCTGACATCGCTGGTTACCTTCCCGTTGAGTTGGGCTTGTTAACCGACATTGCCATGTTTCATATCAATACAAACAGGTTTTGTGGGATCATTCCTACGACTTTCTCGAACCTCAAGCTTCTTTTCGAGCTCGATGTTAGTAATAATAGGTTTGTGGGTCCGTTCCCTACAGTCGTGTTAGAGCTTCCGGCTATTTCGTATCTTGATCTCAGGTTCAACGATTTTGAAGGTTGTTTGCCTGAAGAACTCTTCAACAAGAAAATGGATGCCATCTTCTTGAACAACAATAGGTTCACTTGCTCCATTCCAGAAACTATTGGAAACTCTTCGGTCTCGGTCTTAGTTGTTGCCAATAACCGTTTCAGCGGGTGTATTCCGAGCACAATTGGCAAAATGGCGAACACGTTGAATGAGATTATCTTCGTGAACAATGAATTTGTAGGATGCCTGCCTCAAGAGATCGGCATGCTTGGTAATGTATCGGTGTTTGATATCGGAAATAACAAAATCAGTGGACTCTTGCCTAAGGCATTGAGTGGTCTTAGAAAGGTAGAACAGTTAGATGTCTCGAAGAATATTCTCACAGGATTTGTTACAGAGAGCGTTTGCCAGTTGCCTAAATTGGTGAACTTCACATTTTCTTACAACTTCTTCAACGGGGAAGCTACACAATGTAAGCCATGGTCAAGAAGGGGAGTTCTGTTTGATGATGTAAGCAATTGTTTACCGGATAAACCTAAACAAAAGCCAGAAAAGGAATGTAGTCCGGTTGTTAGCAAGCCAGTCGATTGTGGGAAAGGATTGTGTGGTGGCCGCCCACCGGTTAGTCCTACCCCGAACCCGCATCCTAATCCACCAAAACCACAACCTCCATCACCACCTGTAGAGCACTCTCCGGAGCCAACTCCGGAACACCCTTCACCACCATTTGTACCGTCACCAAAGCACGAGCCTGAGCCTCCGGAACCATCAGTACCATCCCCGTTGGAAGACCCTATAGAACTTTCACCCGTTCCGAAATCATCATATAATGCTCCGACACCTTCACCAACGGATGACCCAATTAAGGTATCACCAACACCTAAGACATCACCGGCTCTGTCGCCACTGCCACCTGTTCATTCCCCACCTCCCCCAGTTCACCCTCTGCCGCCACCACCTCCTATTCAATCGCCACCACCTCCGGTTCCCTCACCCCCACATCCAGTTCAATCCCCACCACCTCCCGTTCAGTCACCCCCACCTCCGGTCCACTCTCCTCCACCATCTCCTGTTCAGCCACCCCCGCCTATGGTACGCTCTCCACCACCTCCTGTGCACTCACCCCCGCCTCCGGTACACTCTCCACCACCACCTCCCGTTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCTGTTCAATCACCCCCACCACCCCCACCACCAGTTAAGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCACCTAAGTCTCCACCCCCACCTCCCGTTCAATCACCCCCACCACCAGTTATGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCTCCCGTTCAGTCACCCCCGCCACCGGTTCGCTCTCCACCTCCTCCTGTTTTCTCACCACCACCTCCTAAGGAAGACATAATCTTGCCACCCAATTTCGGCTCATCGTACATGTCCCCTCCTCCTCCAATATTCGCCGGTTACTAA 2361 50.83 MQAFGCLFLLPLLILFSSSSSYALSDVEVSYIARRQLLSFGENHLVTLNPNYQNVEDNNIEETFENERLKRAYIALQAWKKAIYSDPFNTTTNWVGTDVCAYTGVFCAEALDDPKVTVVAGIDINHADIAGYLPVELGLLTDIAMFHINTNRFCGIIPTTFSNLKLLFELDVSNNRFVGPFPTVVLELPAISYLDLRFNDFEGCLPEELFNKKMDAIFLNNNRFTCSIPETIGNSSVSVLVVANNRFSGCIPSTIGKMANTLNEIIFVNNEFVGCLPQEIGMLGNVSVFDIGNNKISGLLPKALSGLRKVEQLDVSKNILTGFVTESVCQLPKLVNFTFSYNFFNGEATQCKPWSRRGVLFDDVSNCLPDKPKQKPEKECSPVVSKPVDCGKGLCGGRPPVSPTPNPHPNPPKPQPPSPPVEHSPEPTPEHPSPPFVPSPKHEPEPPEPSVPSPLEDPIELSPVPKSSYNAPTPSPTDDPIKVSPTPKTSPALSPLPPVHSPPPPVHPLPPPPPIQSPPPPVPSPPHPVQSPPPPVQSPPPPVHSPPPSPVQPPPPMVRSPPPPVHSPPPPVHSPPPPPVQSPPPPVKSPPPPPIQSPPPPVKSPPPPPIQSPPPPVKSPPPPPVQSPPPPVKSPPPPPVQSPPPPPPPVKSPPPPPVQSPPPPVKSPPPPPIQSPPPPVKSPPPPPIQSPPPPVKSPPPPPVQSPPPPPKSPPPPPVQSPPPPVMSPPPPPVQSPPPPPVQSPPPPVRSPPPPVFSPPPPKEDIILPPNFGSSYMSPPPPIFAGY 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 717390 719880 + Conep20aG0017400.1 Cone20ag0166 460070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0166 786 Gene3D Ribonuclease Inhibitor 71 357 IPR032675 -
Cone20ag0166 786 PRINTS Pistil-specific extensin-like signature 706 729 IPR003882 -
Cone20ag0166 786 PRINTS Pistil-specific extensin-like signature 513 524 IPR003882 -
Cone20ag0166 786 PRINTS Pistil-specific extensin-like signature 741 759 IPR003882 -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 490 766 - -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 466 489 - -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 400 459 - -
Cone20ag0166 786 SUPERFAMILY L domain-like 74 350 - -
Cone20ag0166 786 FunFam Leucine-rich repeat extensin-like protein 1 73 234 - -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 395 786 - -
Cone20ag0166 786 Pfam Leucine rich repeat N-terminal domain 75 107 IPR013210 -
Cone20ag0166 786 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 611 IPR051582 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0166 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0166 Cone-Chr20:717390 Cone5ag1503 Cone-Chr5:10171994 6.30E-47 dispersed
Cone17ag1306 Cone-Chr17:9298742 Cone20ag0166 Cone-Chr20:717390 1.80E-112 wgd
Cone20ag0166 Cone-Chr20:717390 Cone4ag1548 Cone-Chr4:11925894 5.79E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0716 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 64.0 1.8e-51 201.8
Cone4ag1835 . 48 389 Leucine-rich Repeat extension Gene Families AT1G62440 56.1 2.3e-46 184.9
Cone7ag0673 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 62.0 3.9e-46 184.1
Cone17ag1306 . 55 392 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 5.6e-45 180.3
Cone5ag1503 . 66 245 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 8.4e-41 166.4
Cone4ag0264 . 39 364 Leucine-rich Repeat extension Gene Families AT1G62440 56.4 2.4e-40 164.9
Cone4ag1548 . 58 226 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 1.2e-39 162.5
Cone2ag0284 . 66 236 Leucine-rich Repeat extension Gene Families AT1G62440 66.1 1.3e-38 159.1
Cone16ag0754 . 67 237 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 1.3e-38 159.1
Cone7ag1740 . 3 212 Leucine-rich Repeat extension Gene Families AT1G62440 57.1 2.3e-38 158.3
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT1G62440 52.3 3.0e-38 157.9
Cone4ag0716 . 1 413 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.9e-74 278.1
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT4G13340 76.4 4.0e-72 270.4
Cone16ag0754 . 39 411 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 3.1e-64 244.2
Cone2ag0284 . 38 410 Leucine-rich Repeat extension Gene Families AT4G13340 73.8 1.5e-63 241.9
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-56 219.2
Cone5ag1503 . 21 266 Leucine-rich Repeat extension Gene Families AT4G13340 57.7 9.2e-45 179.5
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT4G13340 77.0 2.3e-43 174.9
Cone17ag1306 . 18 212 Leucine-rich Repeat extension Gene Families AT4G13340 62.6 2.1e-41 168.3
Cone20ag0166 . 18 224 Leucine-rich Repeat extension Gene Families AT4G13340 65.9 2.4e-40 164.9
Cone4ag0264 . 39 367 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 3.1e-40 164.5
Cone12ag1471 . 55 382 Leucine-rich Repeat extension Gene Families AT4G13340 55.9 3.8e-38 157.5
Cone4ag1548 . 13 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.4e-37 155.6
Cone4ag0716 . 35 417 Leucine-rich Repeat extension Gene Families AT3G24480 77.7 8.3e-87 318.5
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT3G24480 75.7 5.8e-80 295.8
Cone16ag0754 . 31 407 Leucine-rich Repeat extension Gene Families AT3G24480 72.5 1.1e-70 265.0
Cone2ag0284 . 30 406 Leucine-rich Repeat extension Gene Families AT3G24480 71.2 2.3e-68 257.3
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT3G24480 62.1 3.3e-59 226.9
Cone5ag1503 . 18 266 Leucine-rich Repeat extension Gene Families AT3G24480 59.2 1.5e-48 191.4
Cone4ag0264 . 25 367 Leucine-rich Repeat extension Gene Families AT3G24480 56.4 1.9e-46 184.5
Cone17ag1306 . 17 212 Leucine-rich Repeat extension Gene Families AT3G24480 64.5 4.2e-46 183.3
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT3G24480 70.5 5.6e-43 172.9
Cone4ag1548 . 17 225 Leucine-rich Repeat extension Gene Families AT3G24480 60.3 6.9e-41 166.0
Cone20ag0166 . 17 404 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 1.2e-40 165.2
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT3G24480 53.4 2.9e-39 160.6
Cone4ag0264 . 6 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.4 5.7e-61 232.6
Cone4ag1835 . 60 386 Leucine-rich Repeat extension Gene Families AT3G22800 66.2 2.2e-52 204.1
Cone12ag1471 . 57 382 Leucine-rich Repeat extension Gene Families AT3G22800 61.5 2.0e-50 197.6
Cone4ag0716 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 62.4 9.1e-43 172.2
Cone7ag0673 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 1.3e-41 168.3
Cone7ag1740 . 1 282 Leucine-rich Repeat extension Gene Families AT3G22800 71.0 5.0e-41 166.4
Cone2ag0284 . 78 402 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 2.1e-39 161.0
Cone16ag0754 . 79 403 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 2.1e-39 161.0
Cone4ag1835 . 32 386 Leucine-rich Repeat extension Gene Families AT5G25550 62.0 2.1e-54 210.7
Cone4ag0264 . 33 364 Leucine-rich Repeat extension Gene Families AT5G25550 61.4 2.0e-44 177.6
Cone2ag0284 . 52 402 Leucine-rich Repeat extension Gene Families AT5G25550 62.8 2.5e-39 160.6
Cone7ag0673 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 60.3 4.3e-39 159.8
Cone4ag0716 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 57.8 9.6e-39 158.7
Cone16ag0754 . 53 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.5 8.2e-38 155.6
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 6.9e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92