Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0166 ATGCAGGCCTTTGGCTGCCTTTTCCTTCTCCCTCTTTTGATACTTTTCTCTTCATCCTCTTCATATGCTCTCTCCGATGTCGAAGTTTCTTATATCGCACGCCGCCAGTTATTAAGCTTCGGCGAGAATCATTTAGTAACCCTCAACCCGAATTATCAGAATGTGGAGGATAATAACATAGAAGAGACTTTTGAAAATGAAAGGCTTAAAAGGGCTTACATTGCCCTCCAAGCATGGAAAAAGGCTATTTACTCGGACCCGTTTAACACAACAACTAATTGGGTGGGTACTGATGTGTGTGCGTATACAGGGGTTTTCTGCGCGGAGGCACTTGATGACCCGAAAGTGACCGTTGTTGCCGGAATTGATATTAACCATGCTGACATCGCTGGTTACCTTCCCGTTGAGTTGGGCTTGTTAACCGACATTGCCATGTTTCATATCAATACAAACAGGTTTTGTGGGATCATTCCTACGACTTTCTCGAACCTCAAGCTTCTTTTCGAGCTCGATGTTAGTAATAATAGGTTTGTGGGTCCGTTCCCTACAGTCGTGTTAGAGCTTCCGGCTATTTCGTATCTTGATCTCAGGTTCAACGATTTTGAAGGTTGTTTGCCTGAAGAACTCTTCAACAAGAAAATGGATGCCATCTTCTTGAACAACAATAGGTTCACTTGCTCCATTCCAGAAACTATTGGAAACTCTTCGGTCTCGGTCTTAGTTGTTGCCAATAACCGTTTCAGCGGGTGTATTCCGAGCACAATTGGCAAAATGGCGAACACGTTGAATGAGATTATCTTCGTGAACAATGAATTTGTAGGATGCCTGCCTCAAGAGATCGGCATGCTTGGTAATGTATCGGTGTTTGATATCGGAAATAACAAAATCAGTGGACTCTTGCCTAAGGCATTGAGTGGTCTTAGAAAGGTAGAACAGTTAGATGTCTCGAAGAATATTCTCACAGGATTTGTTACAGAGAGCGTTTGCCAGTTGCCTAAATTGGTGAACTTCACATTTTCTTACAACTTCTTCAACGGGGAAGCTACACAATGTAAGCCATGGTCAAGAAGGGGAGTTCTGTTTGATGATGTAAGCAATTGTTTACCGGATAAACCTAAACAAAAGCCAGAAAAGGAATGTAGTCCGGTTGTTAGCAAGCCAGTCGATTGTGGGAAAGGATTGTGTGGTGGCCGCCCACCGGTTAGTCCTACCCCGAACCCGCATCCTAATCCACCAAAACCACAACCTCCATCACCACCTGTAGAGCACTCTCCGGAGCCAACTCCGGAACACCCTTCACCACCATTTGTACCGTCACCAAAGCACGAGCCTGAGCCTCCGGAACCATCAGTACCATCCCCGTTGGAAGACCCTATAGAACTTTCACCCGTTCCGAAATCATCATATAATGCTCCGACACCTTCACCAACGGATGACCCAATTAAGGTATCACCAACACCTAAGACATCACCGGCTCTGTCGCCACTGCCACCTGTTCATTCCCCACCTCCCCCAGTTCACCCTCTGCCGCCACCACCTCCTATTCAATCGCCACCACCTCCGGTTCCCTCACCCCCACATCCAGTTCAATCCCCACCACCTCCCGTTCAGTCACCCCCACCTCCGGTCCACTCTCCTCCACCATCTCCTGTTCAGCCACCCCCGCCTATGGTACGCTCTCCACCACCTCCTGTGCACTCACCCCCGCCTCCGGTACACTCTCCACCACCACCTCCCGTTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCTGTTCAATCACCCCCACCACCCCCACCACCAGTTAAGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCACCTCCCATTCAATCACCCCCACCACCAGTTAAGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCACCTAAGTCTCCACCCCCACCTCCCGTTCAATCACCCCCACCACCAGTTATGTCTCCACCGCCGCCTCCCGTTCAATCACCCCCACCACCTCCCGTTCAGTCACCCCCGCCACCGGTTCGCTCTCCACCTCCTCCTGTTTTCTCACCACCACCTCCTAAGGAAGACATAATCTTGCCACCCAATTTCGGCTCATCGTACATGTCCCCTCCTCCTCCAATATTCGCCGGTTACTAA 2361 50.83 MQAFGCLFLLPLLILFSSSSSYALSDVEVSYIARRQLLSFGENHLVTLNPNYQNVEDNNIEETFENERLKRAYIALQAWKKAIYSDPFNTTTNWVGTDVCAYTGVFCAEALDDPKVTVVAGIDINHADIAGYLPVELGLLTDIAMFHINTNRFCGIIPTTFSNLKLLFELDVSNNRFVGPFPTVVLELPAISYLDLRFNDFEGCLPEELFNKKMDAIFLNNNRFTCSIPETIGNSSVSVLVVANNRFSGCIPSTIGKMANTLNEIIFVNNEFVGCLPQEIGMLGNVSVFDIGNNKISGLLPKALSGLRKVEQLDVSKNILTGFVTESVCQLPKLVNFTFSYNFFNGEATQCKPWSRRGVLFDDVSNCLPDKPKQKPEKECSPVVSKPVDCGKGLCGGRPPVSPTPNPHPNPPKPQPPSPPVEHSPEPTPEHPSPPFVPSPKHEPEPPEPSVPSPLEDPIELSPVPKSSYNAPTPSPTDDPIKVSPTPKTSPALSPLPPVHSPPPPVHPLPPPPPIQSPPPPVPSPPHPVQSPPPPVQSPPPPVHSPPPSPVQPPPPMVRSPPPPVHSPPPPVHSPPPPPVQSPPPPVKSPPPPPIQSPPPPVKSPPPPPIQSPPPPVKSPPPPPVQSPPPPVKSPPPPPVQSPPPPPPPVKSPPPPPVQSPPPPVKSPPPPPIQSPPPPVKSPPPPPIQSPPPPVKSPPPPPVQSPPPPPKSPPPPPVQSPPPPVMSPPPPPVQSPPPPPVQSPPPPVRSPPPPVFSPPPPKEDIILPPNFGSSYMSPPPPIFAGY 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 717390 719880 + Conep20aG0017400.1 Cone20ag0166 460070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0166 786 Gene3D Ribonuclease Inhibitor 71 357 IPR032675 -
Cone20ag0166 786 PRINTS Pistil-specific extensin-like signature 706 729 IPR003882 -
Cone20ag0166 786 PRINTS Pistil-specific extensin-like signature 513 524 IPR003882 -
Cone20ag0166 786 PRINTS Pistil-specific extensin-like signature 741 759 IPR003882 -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 490 766 - -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 466 489 - -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 400 459 - -
Cone20ag0166 786 SUPERFAMILY L domain-like 74 350 - -
Cone20ag0166 786 FunFam Leucine-rich repeat extensin-like protein 1 73 234 - -
Cone20ag0166 786 MobiDBLite consensus disorder prediction 395 786 - -
Cone20ag0166 786 Pfam Leucine rich repeat N-terminal domain 75 107 IPR013210 -
Cone20ag0166 786 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 611 IPR051582 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0166 Cone-Chr20:717390 Cone5ag1503 Cone-Chr5:10171994 6.30E-47 dispersed
Cone17ag1306 Cone-Chr17:9298742 Cone20ag0166 Cone-Chr20:717390 1.80E-112 wgd
Cone20ag0166 Cone-Chr20:717390 Cone4ag1548 Cone-Chr4:11925894 5.79E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0166 - - - 0.0