Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0183 ATGCAGATGAAGCAGGTGAAGCCTCTAAGAATAAGCGAGAAACAACTAGTTGTGGTGAGAAGGTCTAGTCGTGTTGCCAAAATGCCAACCCCTGTTTACGCTGAAATTCTCGTTGATCGTGTGACAATACCAAGGAGGGTTTCCAAAGGCAGAGGCAGGGATTTGTCGAACCGAGTTTATGCTTCGGATGAAGCCAGGGAGAATGCTATGGAGAGAGCAGAGCAATTGCAATCAAGCTTGGAGCCTAAGCACCCAGCCTTTATAAAATCAATGCTCCAATCACATGTCACTGGGGGATTCTGGCTGGGCCTTCCTGTGCAATTCTGCAAGATGCATCTTCCGAAAAGGGATGAAGTTATGACATTAATCGATGAAGATGGCGATGAGTACAAAACAGTATTCTTGCCTCGAAAAAATGGACTCAGCGGCGGATGGAAAGGGTTTGCAGTTGCTCATGGATTGGTCGATGGAGATGCCGTCATTTTTCAAGTAATCAGACCTTCTGTAATGAAGGTGTACATTGTTAGGGCGAATGCTCATGAAGAGGATTAA 552 45.65 MQMKQVKPLRISEKQLVVVRRSSRVAKMPTPVYAEILVDRVTIPRRVSKGRGRDLSNRVYASDEARENAMERAEQLQSSLEPKHPAFIKSMLQSHVTGGFWLGLPVQFCKMHLPKRDEVMTLIDEDGDEYKTVFLPRKNGLSGGWKGFAVAHGLVDGDAVIFQVIRPSVMKVYIVRANAHEED 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 791901 793485 + Conep20aG0019100.1 Cone20ag0183 460087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0183 183 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 48 179 IPR044837 -
Cone20ag0183 183 SUPERFAMILY DNA-binding pseudobarrel domain 80 178 IPR015300 -
Cone20ag0183 183 Pfam B3 DNA binding domain 87 177 IPR003340 GO:0003677(InterPro)
Cone20ag0183 183 ProSiteProfiles B3 DNA-binding domain profile. 87 178 IPR003340 GO:0003677(InterPro)
Cone20ag0183 183 CDD B3_DNA 85 176 IPR003340 GO:0003677(InterPro)
Cone20ag0183 183 Gene3D - 61 180 IPR015300 -
Cone20ag0183 183 SMART B3_2 87 178 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0183 Cone-Chr20:791901 Cone3ag1105 Cone-Chr3:29632091 1.12E-39 dispersed
Cone20ag0183 Cone-Chr20:791901 Cone2ag0292 Cone-Chr2:1514742 1.04E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45559 PF00186 DHFR_1 1.40E-34 CL0387 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0183 - - - 0.0