Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0183 | ATGCAGATGAAGCAGGTGAAGCCTCTAAGAATAAGCGAGAAACAACTAGTTGTGGTGAGAAGGTCTAGTCGTGTTGCCAAAATGCCAACCCCTGTTTACGCTGAAATTCTCGTTGATCGTGTGACAATACCAAGGAGGGTTTCCAAAGGCAGAGGCAGGGATTTGTCGAACCGAGTTTATGCTTCGGATGAAGCCAGGGAGAATGCTATGGAGAGAGCAGAGCAATTGCAATCAAGCTTGGAGCCTAAGCACCCAGCCTTTATAAAATCAATGCTCCAATCACATGTCACTGGGGGATTCTGGCTGGGCCTTCCTGTGCAATTCTGCAAGATGCATCTTCCGAAAAGGGATGAAGTTATGACATTAATCGATGAAGATGGCGATGAGTACAAAACAGTATTCTTGCCTCGAAAAAATGGACTCAGCGGCGGATGGAAAGGGTTTGCAGTTGCTCATGGATTGGTCGATGGAGATGCCGTCATTTTTCAAGTAATCAGACCTTCTGTAATGAAGGTGTACATTGTTAGGGCGAATGCTCATGAAGAGGATTAA | 552 | 45.65 | MQMKQVKPLRISEKQLVVVRRSSRVAKMPTPVYAEILVDRVTIPRRVSKGRGRDLSNRVYASDEARENAMERAEQLQSSLEPKHPAFIKSMLQSHVTGGFWLGLPVQFCKMHLPKRDEVMTLIDEDGDEYKTVFLPRKNGLSGGWKGFAVAHGLVDGDAVIFQVIRPSVMKVYIVRANAHEED | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 791901 | 793485 | + | Conep20aG0019100.1 | Cone20ag0183 | 460087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0183 | 183 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 48 | 179 | IPR044837 | - | |
Cone20ag0183 | 183 | SUPERFAMILY | DNA-binding pseudobarrel domain | 80 | 178 | IPR015300 | - | |
Cone20ag0183 | 183 | Pfam | B3 DNA binding domain | 87 | 177 | IPR003340 | GO:0003677(InterPro) | |
Cone20ag0183 | 183 | ProSiteProfiles | B3 DNA-binding domain profile. | 87 | 178 | IPR003340 | GO:0003677(InterPro) | |
Cone20ag0183 | 183 | CDD | B3_DNA | 85 | 176 | IPR003340 | GO:0003677(InterPro) | |
Cone20ag0183 | 183 | Gene3D | - | 61 | 180 | IPR015300 | - | |
Cone20ag0183 | 183 | SMART | B3_2 | 87 | 178 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0183 | Cone-Chr20:791901 | Cone3ag1105 | Cone-Chr3:29632091 | 1.12E-39 | dispersed | |
Cone20ag0183 | Cone-Chr20:791901 | Cone2ag0292 | Cone-Chr2:1514742 | 1.04E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45559 | PF00186 | DHFR_1 | 1.40E-34 | CL0387 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0183 | - | - | - | 0.0 |