Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0184 ATGTCCGGAAATAGTGAGCACCATTCCGTCCCACTTTCAGTGCTGCTTAAGCGTGAATCTGCTTGTGAAAAGATTGAGAGACCCGAACTCTTACATGGTCAGGCAAATCAGAGTAAAAAGGGGGAGGATTTTACCTTACTCAAGACCGAATGCCAAAGAGTGGTGGGAGATGGAGTCTCCACGTTTTCTGTTTTTGGGCTATTCGATGGTCACAATGGGTCTGCAGCAGCAATTTACACTAAGGAGAATCTATTGAACAACGTTCTAGCAGCCATTCCTTCAGATCTTAACAGAGACGAATGGGTAGCAGCATTGCCACGGGCTTTGGTTGCAGGCTTTGTAAAGACGGACAAAGATTTTCTAGAAAAAGGTCAGAAATCTGGTACAACTGTCACTTTCATGATTATAGAAGGATGGGTCATTACGGTTGCATCTGTTGGTGATTCCCGTTGCATATTAGAGTCTGCTGATGGTGGTATTAATTACTTGTCAGCCGATCATAGGCTTGATTGCAATGAAGAAGAGAGAGACCGTATTGTTGCTAGTGGTGGTGAGGTGGGTCGACTCAATACTGGTGGTGGTACACAGATTGGTCCTTTAAGATGTTGGCCTGGTGGTTTGTGTTTATCACGAAGCATTGGTGATATGGATGTAGGCGAATATATTGTTCCAGTTCCCTATGTAAAGCAAGTGAAGCTGCCTACAACGGGTGGTAGGGTTATTATCTCAAGCGATGGTGTTTGGGATGCTTTATCGGCAGAAAGGGCATTTGATTGCTGTCGTGGGATGCCTGCTGAAACTGCTGCCACAGAGATTGTGAAAGAAGCTTTACACGCGAATGGACTTCGAGATGATACTACTTGTGTTGTTATTGATATATTACCCCAGCAGAAAACAGTGACTCCTTTGCCACCACCAAAGAAGCAAGGAAAAGGAATCTTTAAATTCATGTTCCATAAAAGGCCAGATGAACCATCTTCTCCTGTTGAAAAAGAATACATTGAACCAGATGTGCTGGAAGAACTGTTTGAGGAAGGCTCTGCTTTGCTTTCTGAAAGGTTTGACACGAAGTATCCACTCTGCAATCTGTTCAAGATGTTTATATGTGCCGTCTGCCAAGTAGAAATAAAACCCAAAGAGGGTATTTCAATACATAGTTGTAACCAAGGAAAAGTGCGTCCCTGGGATGGCCCTTTCTTATGCTTGAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAATATCACAGATAGACACTATAGTTGA 1269 43.42 MSGNSEHHSVPLSVLLKRESACEKIERPELLHGQANQSKKGEDFTLLKTECQRVVGDGVSTFSVFGLFDGHNGSAAAIYTKENLLNNVLAAIPSDLNRDEWVAALPRALVAGFVKTDKDFLEKGQKSGTTVTFMIIEGWVITVASVGDSRCILESADGGINYLSADHRLDCNEEERDRIVASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLPTTGGRVIISSDGVWDALSAERAFDCCRGMPAETAATEIVKEALHANGLRDDTTCVVIDILPQQKTVTPLPPPKKQGKGIFKFMFHKRPDEPSSPVEKEYIEPDVLEELFEEGSALLSERFDTKYPLCNLFKMFICAVCQVEIKPKEGISIHSCNQGKVRPWDGPFLCLSCQEKKEAMEGKNITDRHYS 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 794121 797739 + Conep20aG0019200.1 Cone20ag0184 460088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0184 422 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Cone20ag0184 422 Pfam Protein phosphatase 2C 53 278 IPR001932 -
Cone20ag0184 422 SUPERFAMILY PP2C-like 36 293 IPR036457 -
Cone20ag0184 422 PANTHER PROTEIN PHOSPHATASE 38 292 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone20ag0184 422 FunFam probable protein phosphatase 2C 12 32 299 - -
Cone20ag0184 422 SMART PP2C_4 18 291 IPR001932 -
Cone20ag0184 422 SMART PP2C_SIG_2 46 293 IPR001932 -
Cone20ag0184 422 CDD PP2Cc 39 293 IPR001932 -
Cone20ag0184 422 Gene3D - 32 301 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0184 Cone-Chr20:794121 Cone5ag0061 Cone-Chr5:306019 5.36E-163 dispersed
Cone17ag0840 Cone-Chr17:6701476 Cone20ag0184 Cone-Chr20:794121 2.68E-292 wgd
Cone20ag0184 Cone-Chr20:794121 Cone4ag1564 Cone-Chr4:12007728 2.41E-245 wgd
Cone20ag0184 Cone-Chr20:794121 Cone7ag1386 Cone-Chr7:9975888 8.88E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0184 - - - 0.0