Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0198 ATGCAAGGGCAAAGGGGTGGTAGTAGTTCCTCATCAGAAACCCTAAACTTCGACCATGGATCTTCTTCATCCAGTAATGTTGCTATAGATCAGCAGATTTTCTGGAGTAGTATGAGGAATCCCTCGGTCAATATAATGCCAGACTTTCTACTGCCTCCAGGTGATATGAACATCGCCTATGTGAATTCAGCGGACCACCACGAACCACAGAGTTTGACCAGGTGGAGCTTTGGTCACCCTGTTCCGAGTTTAGAAGGCGGGACCTATGAACCAAACAATCATCTCTCTTTGGGTGATGCAAATTTGAACCCCATGATCACGCAAAGACCCAACTCTCATCCAATTCTGCAGAATCTTAACCTGAATGGGCAGATTCCATCATCTTGTGCTTCTGATTCTTTCTTACTCCCTTCAAGGAGTGATCCAAGCCCTTCAATGGAGGGTCGACGTTCATCTTGTAAAAGGAAGGCTCTTGAAGAGATTGGAAGTAGTTCTGGAAACACTATTCCCTCTGTCTATAGTACTCCACATGGGAGTTTAAGCATATCAGCTCCACCGGAACAGGTGACTTCTGCAAGTGTGGAGGAAAGTCTGGAAGGTTCTCACAGAAATCTCCGTATAAGGGTAGGTTCATCAATTCAACACGATTCTATATTGGGGAGTGCTTTCTGCCATCCCTCCGGGGTCCCATCTTCCCAGATGCCTGCAAGACTCATTCCTGTGGATCATCCTTTGGACTTAAGATCATCTCCGGCTGTTGACAATATGAGTGGTCAAAGGCAGCCCATTTTGTCCCATGTTCCGGGTTTGTCTCAAAGTGTGGAGACTGTTAGGTCAAGAAGCATGGGGGGGAGGAACATTCTAGAACATCCCGTTTTTATGCCTGCTACTGAGTTGAGAAACTTTGTTTGGAATCCTACGAATAGAAGTTCAGGTGGTGGAATGAATATTCCTGGGAGTCATAATAATAATGTTGGTTCTACTTCTCGCACTGTTCATCCGCCTTCAGATGGGGCCACTTGGCCTCCTCACGAGAATCCACCTCCTTATCCATTATATCCGAGAAGGCTGTCGGAATATGTTCGTAGTAGATATTCTTCATCGTCTGGTTTTGGGTCTGGAGGTCAGGCAAGTAATTACTCGCCACTACAGTCAGGTCCCACTTCATCGTCACAAGATGTGGTTCTTCCTCCTGGAGGTGGTAACCCCCTTCGTCAGCATCATCATCATCCATTATTACAAGCAAGATCAGCAACATGGATGGAGCGACAAGGTGGTGACATGGCACTTGGCCTTCCCTACTCGTTGCGAGCTTTGGCCACGGGTGCCGGTGAAGGAAGCGGAAGTTATAGTAGACTCGTTTCTGAGATTCGAAATGTCCTGGGTCTAATGCGGAGGGGAGAGAGCTTACGGCTTGAGGATGTTATGATCCTGGACCAGTCTGTATTTTACGGGATGGCTGATATTCATGATCGGCATAGAGATATGCGTCTTGATGTTGATAACATGTCGTATGAGGAATTACTAGCTCTTGAAGAGCAGATTGGCAATGTGAATACTGGGCTCGGTGAAGAGATGATTCAAACTCGTCTTAGACAACATAAATATTCAAATGTTGCTGGATTTCGGCTACAGACCGAACCATGCTGTATTTGTCAGGAGGAATATAGTGAAGCAGATGATCTTGGGAAATTGGATTGTGGACATGATTTTCATACTAATTGTATTAAGCAATGGTTAATGCACAAGAACTTGTGTCCCATCTGTAAAACGACGGCCCTCAAAACCTAA 1791 45.73 MQGQRGGSSSSSETLNFDHGSSSSSNVAIDQQIFWSSMRNPSVNIMPDFLLPPGDMNIAYVNSADHHEPQSLTRWSFGHPVPSLEGGTYEPNNHLSLGDANLNPMITQRPNSHPILQNLNLNGQIPSSCASDSFLLPSRSDPSPSMEGRRSSCKRKALEEIGSSSGNTIPSVYSTPHGSLSISAPPEQVTSASVEESLEGSHRNLRIRVGSSIQHDSILGSAFCHPSGVPSSQMPARLIPVDHPLDLRSSPAVDNMSGQRQPILSHVPGLSQSVETVRSRSMGGRNILEHPVFMPATELRNFVWNPTNRSSGGGMNIPGSHNNNVGSTSRTVHPPSDGATWPPHENPPPYPLYPRRLSEYVRSRYSSSSGFGSGGQASNYSPLQSGPTSSSQDVVLPPGGGNPLRQHHHHPLLQARSATWMERQGGDMALGLPYSLRALATGAGEGSGSYSRLVSEIRNVLGLMRRGESLRLEDVMILDQSVFYGMADIHDRHRDMRLDVDNMSYEELLALEEQIGNVNTGLGEEMIQTRLRQHKYSNVAGFRLQTEPCCICQEEYSEADDLGKLDCGHDFHTNCIKQWLMHKNLCPICKTTALKT 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 851450 855380 - Conep20aG0020600.1 Cone20ag0198 460102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0198 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 594 IPR013083 -
Cone20ag0198 596 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 149 594 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone20ag0198 596 SMART ring_2 549 589 IPR001841 -
Cone20ag0198 596 MobiDBLite consensus disorder prediction 164 185 - -
Cone20ag0198 596 MobiDBLite consensus disorder prediction 340 354 - -
Cone20ag0198 596 MobiDBLite consensus disorder prediction 304 335 - -
Cone20ag0198 596 MobiDBLite consensus disorder prediction 1 24 - -
Cone20ag0198 596 MobiDBLite consensus disorder prediction 361 396 - -
Cone20ag0198 596 MobiDBLite consensus disorder prediction 304 407 - -
Cone20ag0198 596 FunFam E3 ubiquitin-protein ligase MBR2 517 594 - -
Cone20ag0198 596 Pfam Ring finger domain 549 590 IPR001841 -
Cone20ag0198 596 SUPERFAMILY RING/U-box 548 593 - -
Cone20ag0198 596 ProSiteProfiles Zinc finger RING-type profile. 549 590 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0198 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0136 Cone-Chr19:730622 Cone20ag0198 Cone-Chr20:851450 7.42E-06 dispersed
Cone20ag0198 Cone-Chr20:851450 Cone3ag1184 Cone-Chr3:30512251 5.98E-62 dispersed
Cone10ag0997 Cone-Chr10:6797150 Cone20ag0198 Cone-Chr20:851450 2.33E-58 wgd
Cone17ag0852 Cone-Chr17:6762013 Cone20ag0198 Cone-Chr20:851450 0 wgd
Cone20ag0198 Cone-Chr20:851450 Cone4ag1588 Cone-Chr4:12129337 1.90E-142 wgd
Cone20ag0198 Cone-Chr20:851450 Cone7ag1361 Cone-Chr7:9875390 2.22E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2