Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0199 ATGGGCGATCCACCACCACAGGTTAGTAGCGCAACGTCGTTTTCACTCCCACCGGGTTGTCGATTTTACCCCTCCGATGAACACCTCCTCTGCTACTACCTCACCGAGAAGAACAACAACGCCATTACCAATGCAGTCGACGACGGGACTATACACGGCTATGATTTGATCAAAGAGCTCGACTTGTTCGATTACGATCCCTTCGAATTGCCTGATCGCGCGAGTTTCTCGTACGGTTATGGGGGAAGGAAGAGGCATTGGCTCTGCTACGCTGTTAGGGTTTTGAAGGAGAGCAGAGGAGGAGGAGTAGGGAGGAGGAACACGAAGAGTGGTTATTGGAGAAAGAAGGGAAAGGCCAGAGATGTGTTGGGTCGAGGAGGTATTGTTTTAGGGACCAAGACGAGCTTCGTCTTCTATTTAGGCACTTCGCCTAAAACCTCTGTTAAGACTGATTGGACTGTGTACCAATATGCTCTAATTGATCATCCTGAGGATTCTTTTGTTCTTTGCCGAGTATTTGTGAGAAGTTGTGGCAGAAACAGCATATTAGAGAATGGTTTGAACTCCTGTGGTGAGGAAAGTGTTTCAGCTGTAGCTTATGCCAGTATTCAACGTAATGGATTGAGTGGCCCTGTTGACGCGAGAATTCCCAATGGAAACTCTCTTGATCTGAGGAATAAGATATCAAAACATGTTACTGATCTTGATGATCAAATAGAGGTTAATGCTTTTGTACCTGATAGAGGAGCGATATTGAATGATGATGTAGAAGAAGCTAATCTCGCCATTTTGGAGGGGGATTTCTTAGAGTTGGATGATCTTGTGGACTAG 831 45.73 MGDPPPQVSSATSFSLPPGCRFYPSDEHLLCYYLTEKNNNAITNAVDDGTIHGYDLIKELDLFDYDPFELPDRASFSYGYGGRKRHWLCYAVRVLKESRGGGVGRRNTKSGYWRKKGKARDVLGRGGIVLGTKTSFVFYLGTSPKTSVKTDWTVYQYALIDHPEDSFVLCRVFVRSCGRNSILENGLNSCGEESVSAVAYASIQRNGLSGPVDARIPNGNSLDLRNKISKHVTDLDDQIEVNAFVPDRGAILNDDVEEANLAILEGDFLELDDLVD 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 856873 858619 - Conep20aG0020800.1 Cone20ag0199 460103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0199 276 Pfam No apical meristem (NAM) protein 17 159 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone20ag0199 276 SUPERFAMILY NAC domain 11 175 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone20ag0199 276 Gene3D NAC domain 25 177 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone20ag0199 276 ProSiteProfiles NAC domain profile. 16 175 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone20ag0199 276 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0199 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0199 Cone-Chr20:856873 Cone9ag0150 Cone-Chr9:661549 1.73E-21 dispersed
Cone17ag0853 Cone-Chr17:6767561 Cone20ag0199 Cone-Chr20:856873 1.25E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0853 Cone20ag0199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010514 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45562 None None None None Cone TF