Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0200 | ATGGGAAGCTGCAGCAGCATGAAGGTTCATCAGTACGCTCGTGGATTCAACTGGGATCATCATGATCAACTTCCTTCCCTTACACTTAGCTGCAAACGCTTACGCCCTCTTGCTCCTAAACTCCATAATATCATAGACACTGCTACTACTCCAACTACTAGTACTTCTAGCATTGTTTCCTCTTTTGATCTTAAGAGCTTCATTCGACCCGAGAGTGGCCTGAGAAAACCCGGATCTTCTAACGAGATCAAGATCCTACAAGATTCTCCTCAGTCTCAAGTAGAAACGCTTCCTGGAGGGACGAGATGGAATCCTACACAGGAGCAGATAGGGATACTGGAGATGCTTTATAGGGGAGGAATGAGAACTCCGAATGCGCAACAAATCGAACAAATTACGGCACAACTTGGGAAGTATGGGAAAATCGAAGGTAAGAATGTGTTCTATTGGTTCCAAAATCACAAGGCGAGGGAGAGGCAGAAGCAGAAGCGGAATAGTCTCGGTCTTAAGCATAGTCCTCGAACCCCCGTCGTGAGCTCCACCACCTCTGCCGCCTCTATCACCACCACCGTTAATACTTTCCTCCCACTCGGGGGGGAAGATCAAGTTGAAATTAGAGAGGAAGATAGTCCATATTATAAGAGGAAGTGCAGGAGCTGGGCATTCGAGTGTCTGGTAGGAGATAATGGTACCGTTCATAGTAATGCCTGTACAAAAGAGGATGGTGATAGAACTCTGCAGCTCTTCCCTTTGCACCCAGAAGGAAGATGA | 771 | 46.95 | MGSCSSMKVHQYARGFNWDHHDQLPSLTLSCKRLRPLAPKLHNIIDTATTPTTSTSSIVSSFDLKSFIRPESGLRKPGSSNEIKILQDSPQSQVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLKHSPRTPVVSSTTSAASITTTVNTFLPLGGEDQVEIREEDSPYYKRKCRSWAFECLVGDNGTVHSNACTKEDGDRTLQLFPLHPEGR | 256 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 860496 | 861910 | - | Conep20aG0020900.1 | Cone20ag0200 | 460104 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0200 | 256 | MobiDBLite | consensus disorder prediction | 159 | 183 | - | - | |
| Cone20ag0200 | 256 | FunFam | WUSCHEL-related homeobox 4 | 100 | 167 | - | - | |
| Cone20ag0200 | 256 | SMART | HOX_1 | 98 | 165 | IPR001356 | GO:0003677(InterPro) | |
| Cone20ag0200 | 256 | SUPERFAMILY | Homeodomain-like | 99 | 166 | IPR009057 | - | |
| Cone20ag0200 | 256 | ProSiteProfiles | 'Homeobox' domain profile. | 106 | 161 | IPR001356 | GO:0003677(InterPro) | |
| Cone20ag0200 | 256 | Gene3D | - | 100 | 167 | - | - | |
| Cone20ag0200 | 256 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 5 | 256 | IPR044186 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro) | |
| Cone20ag0200 | 256 | Pfam | Homeodomain | 101 | 160 | IPR001356 | GO:0003677(InterPro) | |
| Cone20ag0200 | 256 | CDD | homeodomain | 101 | 162 | IPR001356 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0684 | Cone-Chr1:6403515 | Cone20ag0200 | Cone-Chr20:860496 | 2.64E-21 | dispersed | |
| Cone20ag0200 | Cone-Chr20:860496 | Cone2ag0760 | Cone-Chr2:33453510 | 3.60E-26 | dispersed | |
| Cone17ag0854 | Cone-Chr17:6775187 | Cone20ag0200 | Cone-Chr20:860496 | 2.23E-160 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45563 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0200 | - | - | - | 0.0 |