Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0200 ATGGGAAGCTGCAGCAGCATGAAGGTTCATCAGTACGCTCGTGGATTCAACTGGGATCATCATGATCAACTTCCTTCCCTTACACTTAGCTGCAAACGCTTACGCCCTCTTGCTCCTAAACTCCATAATATCATAGACACTGCTACTACTCCAACTACTAGTACTTCTAGCATTGTTTCCTCTTTTGATCTTAAGAGCTTCATTCGACCCGAGAGTGGCCTGAGAAAACCCGGATCTTCTAACGAGATCAAGATCCTACAAGATTCTCCTCAGTCTCAAGTAGAAACGCTTCCTGGAGGGACGAGATGGAATCCTACACAGGAGCAGATAGGGATACTGGAGATGCTTTATAGGGGAGGAATGAGAACTCCGAATGCGCAACAAATCGAACAAATTACGGCACAACTTGGGAAGTATGGGAAAATCGAAGGTAAGAATGTGTTCTATTGGTTCCAAAATCACAAGGCGAGGGAGAGGCAGAAGCAGAAGCGGAATAGTCTCGGTCTTAAGCATAGTCCTCGAACCCCCGTCGTGAGCTCCACCACCTCTGCCGCCTCTATCACCACCACCGTTAATACTTTCCTCCCACTCGGGGGGGAAGATCAAGTTGAAATTAGAGAGGAAGATAGTCCATATTATAAGAGGAAGTGCAGGAGCTGGGCATTCGAGTGTCTGGTAGGAGATAATGGTACCGTTCATAGTAATGCCTGTACAAAAGAGGATGGTGATAGAACTCTGCAGCTCTTCCCTTTGCACCCAGAAGGAAGATGA 771 46.95 MGSCSSMKVHQYARGFNWDHHDQLPSLTLSCKRLRPLAPKLHNIIDTATTPTTSTSSIVSSFDLKSFIRPESGLRKPGSSNEIKILQDSPQSQVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLKHSPRTPVVSSTTSAASITTTVNTFLPLGGEDQVEIREEDSPYYKRKCRSWAFECLVGDNGTVHSNACTKEDGDRTLQLFPLHPEGR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 860496 861910 - Conep20aG0020900.1 Cone20ag0200 460104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0200 256 MobiDBLite consensus disorder prediction 159 183 - -
Cone20ag0200 256 FunFam WUSCHEL-related homeobox 4 100 167 - -
Cone20ag0200 256 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Cone20ag0200 256 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Cone20ag0200 256 ProSiteProfiles 'Homeobox' domain profile. 106 161 IPR001356 GO:0003677(InterPro)
Cone20ag0200 256 Gene3D - 100 167 - -
Cone20ag0200 256 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 256 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cone20ag0200 256 Pfam Homeodomain 101 160 IPR001356 GO:0003677(InterPro)
Cone20ag0200 256 CDD homeodomain 101 162 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0200 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0684 Cone-Chr1:6403515 Cone20ag0200 Cone-Chr20:860496 2.64E-21 dispersed
Cone20ag0200 Cone-Chr20:860496 Cone2ag0760 Cone-Chr2:33453510 3.60E-26 dispersed
Cone17ag0854 Cone-Chr17:6775187 Cone20ag0200 Cone-Chr20:860496 2.23E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0901 . 31 163 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 32 164 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 30 281 Wox Gene Family AT4G35550 55.3 6.3e-73 271.6
Cone8ag0901 . 1 280 Wox Gene Family AT4G35550 52.3 2.4e-72 269.6
Cone20ag0200 . 7 167 Wox Gene Family AT1G46480 65.9 4.0e-53 205.3
Cone17ag0854 . 7 167 Wox Gene Family AT1G46480 66.5 1.5e-52 203.4
Cone9ag0982 . 1 141 Wox Gene Family AT5G45980 56.7 1.0e-40 164.9
Cone9ag0982 . 1 126 Wox Gene Family AT2G33880 77.2 3.0e-47 186.8
Cone20ag0200 . 7 167 Wox Gene Family AT1G46480 65.9 4.0e-53 205.3
Cone17ag0854 . 7 167 Wox Gene Family AT1G46480 66.5 1.5e-52 203.4
Cone9ag0982 . 1 141 Wox Gene Family AT5G45980 56.7 1.0e-40 164.9
Cone9ag0982 . 1 126 Wox Gene Family AT2G33880 77.2 3.0e-47 186.8
Cone8ag0901 . 31 163 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 32 164 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 30 281 Wox Gene Family AT4G35550 55.3 6.3e-73 271.6
Cone8ag0901 . 1 280 Wox Gene Family AT4G35550 52.3 2.4e-72 269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45563 None None None None Cone TF