Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0200 ATGGGAAGCTGCAGCAGCATGAAGGTTCATCAGTACGCTCGTGGATTCAACTGGGATCATCATGATCAACTTCCTTCCCTTACACTTAGCTGCAAACGCTTACGCCCTCTTGCTCCTAAACTCCATAATATCATAGACACTGCTACTACTCCAACTACTAGTACTTCTAGCATTGTTTCCTCTTTTGATCTTAAGAGCTTCATTCGACCCGAGAGTGGCCTGAGAAAACCCGGATCTTCTAACGAGATCAAGATCCTACAAGATTCTCCTCAGTCTCAAGTAGAAACGCTTCCTGGAGGGACGAGATGGAATCCTACACAGGAGCAGATAGGGATACTGGAGATGCTTTATAGGGGAGGAATGAGAACTCCGAATGCGCAACAAATCGAACAAATTACGGCACAACTTGGGAAGTATGGGAAAATCGAAGGTAAGAATGTGTTCTATTGGTTCCAAAATCACAAGGCGAGGGAGAGGCAGAAGCAGAAGCGGAATAGTCTCGGTCTTAAGCATAGTCCTCGAACCCCCGTCGTGAGCTCCACCACCTCTGCCGCCTCTATCACCACCACCGTTAATACTTTCCTCCCACTCGGGGGGGAAGATCAAGTTGAAATTAGAGAGGAAGATAGTCCATATTATAAGAGGAAGTGCAGGAGCTGGGCATTCGAGTGTCTGGTAGGAGATAATGGTACCGTTCATAGTAATGCCTGTACAAAAGAGGATGGTGATAGAACTCTGCAGCTCTTCCCTTTGCACCCAGAAGGAAGATGA 771 46.95 MGSCSSMKVHQYARGFNWDHHDQLPSLTLSCKRLRPLAPKLHNIIDTATTPTTSTSSIVSSFDLKSFIRPESGLRKPGSSNEIKILQDSPQSQVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLKHSPRTPVVSSTTSAASITTTVNTFLPLGGEDQVEIREEDSPYYKRKCRSWAFECLVGDNGTVHSNACTKEDGDRTLQLFPLHPEGR 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 860496 861910 - Conep20aG0020900.1 Cone20ag0200 460104
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0200 256 MobiDBLite consensus disorder prediction 159 183 - -
Cone20ag0200 256 FunFam WUSCHEL-related homeobox 4 100 167 - -
Cone20ag0200 256 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Cone20ag0200 256 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Cone20ag0200 256 ProSiteProfiles 'Homeobox' domain profile. 106 161 IPR001356 GO:0003677(InterPro)
Cone20ag0200 256 Gene3D - 100 167 - -
Cone20ag0200 256 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 256 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cone20ag0200 256 Pfam Homeodomain 101 160 IPR001356 GO:0003677(InterPro)
Cone20ag0200 256 CDD homeodomain 101 162 IPR001356 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0684 Cone-Chr1:6403515 Cone20ag0200 Cone-Chr20:860496 2.64E-21 dispersed
Cone20ag0200 Cone-Chr20:860496 Cone2ag0760 Cone-Chr2:33453510 3.60E-26 dispersed
Cone17ag0854 Cone-Chr17:6775187 Cone20ag0200 Cone-Chr20:860496 2.23E-160 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45563 None None None None Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0200 - - - 0.0