Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0201 ATGGAAGGGGAGTGTTGCTCGACAAGAAGAGGAAGCCCAGAAGAGAAGAGGAAGCAACAAGAGAAGCCATATAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTAGAGAGCCAAACAAGAGGTCTAGGATTTGGTTAGGCTCCTACACCACTCCGATAGCCGCGGCTCGAGCGTACGACACGGCGGTGTTCTATCTCCGAGGACCGACTGCTCGTCTTAATTTTCCGGAACTGGTGTTTCATGAAGACCAGCTACACGACATGTCCGCCGCCGCTATAAGGAAGAGAGCTACTGAGGTGGGGATGAAGGTTGACGCAATCCAGATATCTCTTCACTCCTCCAAATCGGATTCGGGTCATGTTATCGTGTCTTCTCATGATACAAAACCGGATTTGAATGAGTTTCCTGAGCCGGAAGATTCTGATGAAGACTAA 447 49.89 MEGECCSTRRGSPEEKRKQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPTARLNFPELVFHEDQLHDMSAAAIRKRATEVGMKVDAIQISLHSSKSDSGHVIVSSHDTKPDLNEFPEPEDSDED 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 868165 869130 - Conep20aG0021000.1 Cone20ag0201 460105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0201 148 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 MobiDBLite consensus disorder prediction 122 148 - -
Cone20ag0201 148 Pfam AP2 domain 24 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 CDD AP2 24 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Cone20ag0201 148 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677(InterPro)
Cone20ag0201 148 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0201 148 MobiDBLite consensus disorder prediction 1 23 - -
Cone20ag0201 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0201 Cone-Chr20:868165 Cone4ag1168 Cone-Chr4:9947641 4.75E-24 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone20ag0201 Cone-Chr20:868165 5.05E-51 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone20ag0201 Cone-Chr20:868165 5.38E-97 wgd
Cone20ag0201 Cone-Chr20:868165 Cone4ag1590 Cone-Chr4:12138815 3.82E-56 wgd
Cone20ag0201 Cone-Chr20:868165 Cone6ag1406 Cone-Chr6:11316885 1.40E-47 wgd
Cone20ag0201 Cone-Chr20:868165 Cone7ag1360 Cone-Chr7:9870629 2.99E-57 wgd
Cone20ag0201 Cone-Chr20:868165 Cone8ag0140 Cone-Chr8:740221 4.75E-48 wgd
Cone20ag0201 Cone-Chr20:868165 Cone9ag1335 Cone-Chr9:10025640 4.85E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45564 PF06708 DUF1195 1.40E-57 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0201 K09286 - csv:101219005 224.942