Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0203 ATGTTGAAGAGGAGACGATCTTCCATCGACCACTGTGTCTTCTTCCTGTCAAGCGCTATTGTTTTACTCTCTCTTTGTTTATTGAACTCGGCATCATCATCATCATCATCGTCATCGCCATCTCCGTCCGATGAACTCGCGCTTCTGGCATTTAAATCCAAGGCTGATTTGAACAACCGCCTCGACTTTCGCTCTATGAAGAACTCCAGTCTCCATTTCTGTAAATGGCAAGGAGTCACCTGCCTCCAACAAAAGGTGGTCCGTCTCGTCCTCCAGAGCTTATATCTCGGCGGCGTTTTCGCTCCCGATACATTGACTCGTCTCGACCAGCTCCGAGTTCTGAGCTTACAGAACAACTCGCTCACCGGTTCAATTCCTGACCTCTCTCAGCTAGTCAACTTGAAATCCCTCTACCTTGACCACAACTCTTTCACTGGTTTTTTCCCTCGCCCAATTTTATCTCTCCGTAGACTGCGTACTATCGATTTCAGTTATAACAACCTCACCGGTTCGATTCCTTCCTGGTTAGCAAACCTAGACCGGCTTTACTATCTCCGGCTCGAGTGGAACCGGTTTAATGGAACTGTTCCTTCTTTCAACCAGTCTTCCCTCGAAACCTTCAACGTCACGGGAAACAACCTCACCGGTGCGATTCCTGTCACACCAACTCTGCTACGGTTCGGACCGTCTTCATTTTTATGGAATCCTGGACTCTGTGGCGAGATTTTAAACAAAGAGTGCCACCCAAGCCCGCCATTTTTCGGTCCCACAGCGGCCGTGGAGATGGCTTCGCCTCCGCCTACTGTGGCTCTCGGTCAGAACGCGGAGGCACACGGCCATTTTGAGTTTACTGATCCGCCGCAAAAGAGCTACAAACAAACGGCGGTTGTTATTGGGTTTTCATTTGGTGTTTTCGTTCTCATCGGTTCCCTACTCTGCTTCTTGTTAGCGGCGAGGAAAAGACAGAGGAGTCGAAAGAAATCAACGGCTATGATGTATTCAGATAGGGAGGTAACAGCACAAGCAGCGGCTGTGATGCAAATAGAGCAAGAAAACGCCGAGCTGGAAGAGAAGGTAAAAAAAGTACAAGAAATGCAAGTGGGTAAAAGCGGGTGCCTACTATTCTGCGCGGGTGAGGCGCATCTGTATACGCTAGACCAGCTGATGAAGGCTTCCGCTGAGTTGCTTGGAAAAGGAACGATGGGGACCACTTACAAAGCCGTGATGGATAACCGTCTGATCGTAACGGTAAAGAGGCTTGATGCGGTTAAATTGGCGGGTACGAATAAAGAGATCGTTGAGCGCCACCTGGAATCAGTTGGCGGGCTCCGGCATCCTAATCTGGTCCCACTTCGCGCCTTTTTTCAAGCTAAAGAAGAGAAGCTCCTTATTTATGATTATCAACCGAACGGCAGCCTCTTCTCCCTCATTCACGGTTCAAAATCAACTAGAGCGAAACCGCTTCACTGGACGTCGTGCTTGAAAATTGCAGAGGACGTAGCACAAGGGCTCGCTTACATCCATCAAGCATGGAGGCTCGTTCATGGAAATCTCAAGTCCTCGAACGTTCTTCTCGGTGCAGACTTCGAAGCATGTCTCACCGACTACTGCATCTCTGTTCTCGCCGGTGATTCACGGCCGGGAGAAGACAAAGACGGTGACTCAAACGCATACAGATCTCCAGAAACTCGAAACTCTATGAAGGTGGACCCATCAGCGACGCCTAAATCTGACGTGTATGCGTTTGGAATTTTATTGGCAGAGCTTCTCACTGGGAAGGTTCCATCTCAACACCCTGTTTTGGTGCCAGACGACATGACGGATTGGGTTAGATCGTGTAGAGAAGATGGACGAGGAGGAGAAGGAGAAGAAGATGAGAGAATGACGATGCTTGTAGAGGTTGCTATTGCTTGTAGCTTACCTTCGCCGGAACAGAGACCAACCATGTGGCAGGTGTTGAAGATGTTGCAGGAGATTAAAGAGACTGTATTGTTGGATGATAGTAATGAAATGGTTCATCCCACGGGGCCATCCCTGTAA 2040 49.07 MLKRRRSSIDHCVFFLSSAIVLLSLCLLNSASSSSSSSSPSPSDELALLAFKSKADLNNRLDFRSMKNSSLHFCKWQGVTCLQQKVVRLVLQSLYLGGVFAPDTLTRLDQLRVLSLQNNSLTGSIPDLSQLVNLKSLYLDHNSFTGFFPRPILSLRRLRTIDFSYNNLTGSIPSWLANLDRLYYLRLEWNRFNGTVPSFNQSSLETFNVTGNNLTGAIPVTPTLLRFGPSSFLWNPGLCGEILNKECHPSPPFFGPTAAVEMASPPPTVALGQNAEAHGHFEFTDPPQKSYKQTAVVIGFSFGVFVLIGSLLCFLLAARKRQRSRKKSTAMMYSDREVTAQAAAVMQIEQENAELEEKVKKVQEMQVGKSGCLLFCAGEAHLYTLDQLMKASAELLGKGTMGTTYKAVMDNRLIVTVKRLDAVKLAGTNKEIVERHLESVGGLRHPNLVPLRAFFQAKEEKLLIYDYQPNGSLFSLIHGSKSTRAKPLHWTSCLKIAEDVAQGLAYIHQAWRLVHGNLKSSNVLLGADFEACLTDYCISVLAGDSRPGEDKDGDSNAYRSPETRNSMKVDPSATPKSDVYAFGILLAELLTGKVPSQHPVLVPDDMTDWVRSCREDGRGGEGEEDERMTMLVEVAIACSLPSPEQRPTMWQVLKMLQEIKETVLLDDSNEMVHPTGPSL 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 874691 877150 - Conep20aG0021200.1 Cone20ag0203 460107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0203 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 43 661 IPR046959 -
Cone20ag0203 679 SUPERFAMILY L domain-like 41 221 - -
Cone20ag0203 679 Gene3D Phosphorylase Kinase; domain 1 353 467 - -
Cone20ag0203 679 Coils Coil 338 368 - -
Cone20ag0203 679 FunFam Nuclear pore complex protein NUP107 41 198 - -
Cone20ag0203 679 Gene3D Transferase(Phosphotransferase) domain 1 469 672 - -
Cone20ag0203 679 Pfam Protein kinase domain 394 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0203 679 Gene3D Ribonuclease Inhibitor 42 201 IPR032675 -
Cone20ag0203 679 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515(InterPro)
Cone20ag0203 679 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Cone20ag0203 679 SUPERFAMILY Protein kinase-like (PK-like) 394 662 IPR011009 -
Cone20ag0203 679 ProSiteProfiles Leucine-rich repeat profile. 110 132 IPR001611 GO:0005515(InterPro)
Cone20ag0203 679 MobiDBLite consensus disorder prediction 546 573 - -
Cone20ag0203 679 Gene3D Ribonuclease Inhibitor 202 251 IPR032675 -
Cone20ag0203 679 Pfam Leucine Rich Repeat 110 127 IPR001611 GO:0005515(InterPro)
Cone20ag0203 679 ProSiteProfiles Protein kinase domain profile. 390 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0203 Cone-Chr20:874691 Cone2ag0274 Cone-Chr2:1410258 1.91E-67 dispersed
Cone20ag0203 Cone-Chr20:874691 Cone7ag1355 Cone-Chr7:9848049 6.21E-249 wgd
Cone20ag0203 Cone-Chr20:874691 Cone9ag1338 Cone-Chr9:10055351 1.59E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82532 PF00067 p450 1.00E-07 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0203 - - - 0.0