Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0209 ATGGCGATCCAAGAATCAAATGCGTTCTTACTGGACGATACTCTCTGCTGCTCGGAAAAGCATTGGGAAGAAGAGGAGCTATTCGAAGAAGACGGTGAAGATGACGAAGTGGATAATATTTCTTACAGTAACTTAAATTACCAACTAAAGACTACTACTCCGACACTGTTAGAACAAGATCTATTTTGGGAAGAGGAAGAGTTAATCTCTCTTCTCTCAAAAGAGCAGCAAAACGTACTCCATAAATCCCTTCAAACAAACCCCTTTTTAGCGGAAGCACGAAAGGAATCCATCGAGTGGATGCTAAAAGTCATCGCCCATTACTCATTCTCTACTCTCACCGCCATTCTCGCCGTTGACTACCTTGACCGGTTTCTATCAAGCTTCCAGTTTCAGAGGGAGAAGCCATGGATGACTCAGCTCGTCTCCGTCGCCTGCGTCTCTCTTGCTGCCAAGGTCGAAGAGACCCACGTCCCACTCCTACTAGACCTGCAAGTGGAGGAGAATAAGTATGTTTTTGAAGCTAAAACGATTAACAGAATGGAGATTCTTGTGCTCTCTAGCCTTCAATGGCGACTGAATCCAGTCACTCCACTTTCCTTTATGGATTTCATGTCAAGGAGGTTAGGATTGAAAGATCATCTCTGTTTTGAGTTTCTTAGAAGATGTGAGCGGACTCTCCTCTCTCTCATTTTAGATTCGAGTTTCGTGTGTTTTATCCCTTCTGTGATCTCGACCGCTACAATGCTGCACGTTTTCAATTGTATAGAACCATGTCTTGGTGTTGAGTATCAAAAACAGCTGTTGGAAATTCTCAGAATCAATAAGGAGGAGGTAGATAAGTGCTATAAACACATCTTGCAAGCATCACTATCATCAGGCTGCAATTTTGGCATGAAATACTGGAACAAACGCAAGTACGGTACCATACCCGGCAGCCCAGATGGCGTGGTCGACATGTCGTTCAGCTCTGATAGCTCAAACGATTCATGGTCCGTCGTAGCACCATCTGTTACATCTTCACCGGAGATTTTTTCCAAGGGGGTCAGGCTCAGCTTTATCACATGA 1068 44.29 MAIQESNAFLLDDTLCCSEKHWEEEELFEEDGEDDEVDNISYSNLNYQLKTTTPTLLEQDLFWEEEELISLLSKEQQNVLHKSLQTNPFLAEARKESIEWMLKVIAHYSFSTLTAILAVDYLDRFLSSFQFQREKPWMTQLVSVACVSLAAKVEETHVPLLLDLQVEENKYVFEAKTINRMEILVLSSLQWRLNPVTPLSFMDFMSRRLGLKDHLCFEFLRRCERTLLSLILDSSFVCFIPSVISTATMLHVFNCIEPCLGVEYQKQLLEILRINKEEVDKCYKHILQASLSSGCNFGMKYWNKRKYGTIPGSPDGVVDMSFSSDSSNDSWSVVAPSVTSSPEIFSKGVRLSFIT 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 896176 900473 + Conep20aG0021900.1 Cone20ag0209 460113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0209 355 Gene3D - 81 194 - -
Cone20ag0209 355 Gene3D - 71 286 - -
Cone20ag0209 355 SUPERFAMILY Cyclin-like 62 194 IPR036915 -
Cone20ag0209 355 FunFam D3-type cyclin 87 194 - -
Cone20ag0209 355 FunFam CYCLIN D32 195 284 - -
Cone20ag0209 355 SUPERFAMILY Cyclin-like 197 303 IPR036915 -
Cone20ag0209 355 SMART cyclin_7 99 187 IPR013763 -
Cone20ag0209 355 PANTHER CYCLINS 59 288 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone20ag0209 355 SMART Cyclin_C_2 196 326 IPR004367 -
Cone20ag0209 355 CDD CYCLIN_AtCycD-like_rpt1 93 191 - -
Cone20ag0209 355 Pfam Cyclin, N-terminal domain 76 194 IPR006671 -
Cone20ag0209 355 CDD CYCLIN_AtCycD-like_rpt2 196 284 - -
Cone20ag0209 355 Pfam Cyclin, C-terminal domain 196 293 IPR004367 -
Cone20ag0209 355 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1080 Cone-Chr12:8861641 Cone20ag0209 Cone-Chr20:896176 4.10E-95 dispersed
Cone20ag0209 Cone-Chr20:896176 Cone20ag0545 Cone-Chr20:3036345 1.56E-47 dispersed
Cone17ag0862 Cone-Chr17:6835105 Cone20ag0209 Cone-Chr20:896176 1.03E-172 wgd
Cone20ag0209 Cone-Chr20:896176 Cone7ag1351 Cone-Chr7:9821020 7.83E-117 wgd
Cone20ag0209 Cone-Chr20:896176 Cone8ag1114 Cone-Chr8:9891151 1.55E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0209 K14505 - mtr:11431822 400.979