Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0216 ATGAATATGAACGACAAGGAGAATTTCGCACGTGTGACGCGCGCCTCGAAGAAGAGAGGTGCTACTGCTAATTCCATGGAGGAAGAACAGAAGCAAGTGACGAAGAAAAGGGTGGTGCTCGGCGAGCTTTCAAATCATCAGTTGGGTACGGTGAATGAAGATTCTCTGGCAGTCGACCCTAAAAAGAAGAAGAAAAAAGATGAGGCGAAGGATAAGGTGAAGAATGCGCTGTCGGAGAATGATGCTGGGTCGGAGGATCCAAAAATTTTATTAGGACCCTATTGTTCTGACATCTACAACTACCTTCGTACGATTGAGAACAATCCGAATAGGAGGCCATTTCCTGATTACATAGCGGCGGTTCAGAAGGATATAAGTGTGAATATGAGGAGCATTTTAGTTGATTGGCTAGTCGAAGTTGCCGAGGAGTATAAGCTTGTTTCAGACACCTTACACCTCTCCATATCATACATGGACAGATTCTTATCAGTCAATCCACTCCTTAGAGGAAAGCTTCAGCTTCTGGGTGTTTCTGCCATGCTTATTGCCTCAAAGTATGAAGAGATTACCCCGCCCCATGTTGAAGAATTCTGCTACATTATGGATAATAGCTATACTAGGGAAGAGGTGTTGAAAATGGAGGCTGATATTCTAAAGTTGTTGAAGTTTGAATTGGGCAATCCTACAGTCAGGACATTCTTAAGAATATTCACGAAAGCTGCTGAAGATGATATCAAAAACATCAATTTGCGTTTAGAATTTTTAACCTACTACCTGGCTGAGTTAAGTCTGTTGGATTACAACTTTGTCAAGTTTGTGCCTTCTTTGGTGGCTGCATCCGTGATCTTCCTTGCAAGATTTATCATGGAGCATAAGTCTCATCCTTGGAGTTCAAGCCTGCAAGAGTATTCTGGATATAAGCCAGATGATTTGAAGGAGTGTGTGCTTCTCTTACACGATTGGTATGTAGGTAGAAGAGGGGCTACTTTTCAATCTATAAGAGAAAAATACAAGCAACATAAGTTCAAGAATGTGGCTGCCATTCCTTCTTCTCCAGATGTTCCAGCACAATATTTTGAAGATCTTGTGGAATTTGAGCGATAG 1104 41.85 MNMNDKENFARVTRASKKRGATANSMEEEQKQVTKKRVVLGELSNHQLGTVNEDSLAVDPKKKKKKDEAKDKVKNALSENDAGSEDPKILLGPYCSDIYNYLRTIENNPNRRPFPDYIAAVQKDISVNMRSILVDWLVEVAEEYKLVSDTLHLSISYMDRFLSVNPLLRGKLQLLGVSAMLIASKYEEITPPHVEEFCYIMDNSYTREEVLKMEADILKLLKFELGNPTVRTFLRIFTKAAEDDIKNINLRLEFLTYYLAELSLLDYNFVKFVPSLVAASVIFLARFIMEHKSHPWSSSLQEYSGYKPDDLKECVLLLHDWYVGRRGATFQSIREKYKQHKFKNVAAIPSSPDVPAQYFEDLVEFER 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 926385 928259 - Conep20aG0022600.1 Cone20ag0216 460120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0216 367 MobiDBLite consensus disorder prediction 21 36 - -
Cone20ag0216 367 PANTHER CYCLINS 71 339 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone20ag0216 367 SUPERFAMILY Cyclin-like 228 350 IPR036915 -
Cone20ag0216 367 MobiDBLite consensus disorder prediction 56 81 - -
Cone20ag0216 367 Pfam Cyclin, C-terminal domain 228 350 IPR004367 -
Cone20ag0216 367 FunFam Cyclin A1 215 347 - -
Cone20ag0216 367 CDD CYCLIN_AtCycA-like_rpt2 228 342 - -
Cone20ag0216 367 Gene3D - 97 347 - -
Cone20ag0216 367 SMART Cyclin_C_2 228 351 IPR004367 -
Cone20ag0216 367 FunFam Mitotic cyclin 6 113 213 - -
Cone20ag0216 367 Pfam Cyclin, N-terminal domain 97 225 IPR006671 -
Cone20ag0216 367 ProSitePatterns Cyclins signature. 130 161 IPR048258 -
Cone20ag0216 367 PIRSF Cyclin_A_B_D_E 2 360 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone20ag0216 367 MobiDBLite consensus disorder prediction 1 82 - -
Cone20ag0216 367 SMART cyclin_7 232 320 IPR013763 -
Cone20ag0216 367 SMART cyclin_7 135 219 IPR013763 -
Cone20ag0216 367 Gene3D - 113 226 - -
Cone20ag0216 367 SUPERFAMILY Cyclin-like 89 225 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0216 Cone-Chr20:926385 Cone7ag1514 Cone-Chr7:10540540 3.45E-86 dispersed
Cone20ag0216 Cone-Chr20:926385 Cone20ag0217 Cone-Chr20:931327 2.55E-124 tandem
Cone17ag0869 Cone-Chr17:6892006 Cone20ag0216 Cone-Chr20:926385 4.35E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0216 K06627 - rcu:8288529 449.514