Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0217 ATGGCCGAGCAAGCAGTCTCCATTCGCGTCACTCGCGCCGCCATGAAGAGAAAGACAGCTTCTGCAAACCCAGACGGCTTGTCGTCCAGGAAGAAGCGGGTGGTTCTGGGAGAGATTCAGAATGTACAGAACGTCGTCGATCCAGTAGAGTTGAAGTCAAACGTTGAGCCGCAGAAACAGAAAACTAGGGTTCAGACGAAGGTCAATAATGTGGAGACTGTAGTCAAGGGCATTGATTCAAACAAGCTGGTAACGGATGCCGATTTAGAGGATTCGCATAAGTGTTCGCCCTATGCTTCAGATATTTATGGATATCTTCGCAAGATGGAAGAGGAGCCGAAAAGAAGACCATTATCTAGTTACATAGAGAAGATTCAGAGTGATGTGAACGCAAATATGAGAGCGGTTTTGGTCGATTGGCTGGTGGAGGTAGCAGAGGAGTACAAGCTTCTTTCAGACACACTTTACCTTTCCATTTCTTATATCGATAGGTTCTTATCTTCGAACGTGATCAGAAGGCAGAAGCTCCAATTACTTGGCGTTTCTTCAATGCTCATTGCCTCAAAGTATGAAGAGATTACTCCTCCAAATATGGAAGATTTCTGCTACATCACAGACAATACATACACCAAAGAAGAGCTGGTGAAGATGGAGGCTGATATACTAAAGTCTTTGAGTTTTGAAATGGGGAATCCTACAACCAAGACATTTCTAAGAAAGTTCATTGATCTTGCTCAAGAAAATGATAAAAAACCAAGTTCACAGTTGGAATTCCTAAGTTGTTATATTGCTGAGCTAAGCTTATTGGATTACAAATGTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCATCTGTTACCTTTTTTGCAAAATTCATTATTCAACCAACAGCTCATCCCTGGTATTCTAAGATGGAACAATATACTGGATACAAGCCATCTGAATTAAAGGAATGTGTCCTCATTTTACATGAATTGCATGCCTCTAAAAGAGGTGTGTCCCTCCGAGCTGTGAGAGAAAAATACAAGCATCAAAAGTTTGAACGCATCGCGAAATTGCGCACGCCATCAGAGATTCCAGCTTCTTATTTTGAAGACGCTTAA 1101 41.96 MAEQAVSIRVTRAAMKRKTASANPDGLSSRKKRVVLGEIQNVQNVVDPVELKSNVEPQKQKTRVQTKVNNVETVVKGIDSNKLVTDADLEDSHKCSPYASDIYGYLRKMEEEPKRRPLSSYIEKIQSDVNANMRAVLVDWLVEVAEEYKLLSDTLYLSISYIDRFLSSNVIRRQKLQLLGVSSMLIASKYEEITPPNMEDFCYITDNTYTKEELVKMEADILKSLSFEMGNPTTKTFLRKFIDLAQENDKKPSSQLEFLSCYIAELSLLDYKCVKFLPSLVAASVTFFAKFIIQPTAHPWYSKMEQYTGYKPSELKECVLILHELHASKRGVSLRAVREKYKHQKFERIAKLRTPSEIPASYFEDA 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 931327 933139 - Conep20aG0022700.1 Cone20ag0217 460121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0217 366 ProSitePatterns Cyclins signature. 134 165 IPR048258 -
Cone20ag0217 366 FunFam Cyclin A1 219 351 - -
Cone20ag0217 366 PANTHER CYCLINS 79 343 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone20ag0217 366 Pfam Cyclin, N-terminal domain 101 229 IPR006671 -
Cone20ag0217 366 Pfam Cyclin, C-terminal domain 232 353 IPR004367 -
Cone20ag0217 366 PIRSF Cyclin_A_B_D_E 2 363 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone20ag0217 366 FunFam Mitotic cyclin 6 117 217 - -
Cone20ag0217 366 SUPERFAMILY Cyclin-like 91 229 IPR036915 -
Cone20ag0217 366 Gene3D - 115 230 - -
Cone20ag0217 366 SMART Cyclin_C_2 232 355 IPR004367 -
Cone20ag0217 366 CDD CYCLIN_AtCycA-like_rpt2 232 346 - -
Cone20ag0217 366 SUPERFAMILY Cyclin-like 232 357 IPR036915 -
Cone20ag0217 366 Gene3D - 101 351 - -
Cone20ag0217 366 SMART cyclin_7 236 324 IPR013763 -
Cone20ag0217 366 SMART cyclin_7 139 223 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0869 Cone-Chr17:6892006 Cone20ag0217 Cone-Chr20:931327 2.26E-120 dispersed
Cone17ag0870 Cone-Chr17:6897358 Cone20ag0217 Cone-Chr20:931327 8.64E-223 dispersed
Cone20ag0217 Cone-Chr20:931327 Cone4ag1423 Cone-Chr4:11351242 5.33E-92 dispersed
Cone20ag0216 Cone-Chr20:926385 Cone20ag0217 Cone-Chr20:931327 2.55E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0217 K06627 - csv:101206145 444.121