Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0218 ATGTACCGCCCAATATCGCCGTCTCCAGGATCTTTTTTACGGTGGCGAGAGATTTGGTCTCGGCTTCTAGCTCCTCTCACTCTTTGGATTTGTGAGCTTGGACCAAGCTCGTCACGGTTGATTAAGGCGAGCTCATTATTTATAGATCACGTTGAAGTAAGAAATGACGATAGCAAAGGTCTTATTCTGTATACCTTTTCTGAGAAGCCTGAATTGAAACTGGAGACGAATTGGAATGTCTCCAAGTACATGATTGTTGCTTCGTACGATCGGAAGAGATTCTCCCTGTGGTTAAACAAGGGTTCAAGGTTCTATATGAGATGGGAAACTCAGAATAGTACTTTAAACCGGCTTCAAGTAATTATGCTCAGAGGGGAGCGGAACTATGAAACACTTCTGCCGAAATGGACAAGTTCTGCTAATTCCTCCATTGTTGGAGAACCAATTACAGGCAAGGAAGCTGAGTATATCATTGAAGAAGACGAAAAGTACCATATTGACATTGTAAACAGTAATCCAAGAAGTATAATTATGAAAATGAATGTAAATGCTTCGTCAAAGGTTTATGATGTTTCTCAAGCAAACGAGGTGTGCTCAACCACAAAGGGTTCATGCCGACTCGGTCTCCAGTTCCCTAATACTCAATACATCGTGCTAACCACACCCATTGATGGAGATATAGTTAGATGGTATGTGGAGCTTTCATTTGTGGCTCGGATCGTAACTTACGTTGCGATTTTAGGATTTTTTGTGATCATAATCTATCTGATATTGATGTATCTGGGAGTATATGATGGTGATAGTCCAGTAATCGAGACAGCTTCAAGGGAAGTAACTGAGACAGAATCCATAGTTATACAGTCAAAGCCAAATGTTACATATGGAACTTGCGAAGAAGATGATGAAGAATCAGGAAGCTCTAGTAGCTCTTCAGATGAATTATATGACGAGAAATTGTGTATAATTTGTTATGATGATCAGCGCAATTGCTTCTTTGTTCCCTGCGGTCATTGTGCCACCTGCTATGACTGTGCTCAAAGGATTATGGAGGGGGAGAACAAGGTATGTCCGATATGTCGGAGGTTTATACATAAAGTTAGAAGATTGTTTAACTCTTAG 1119 40.57 MYRPISPSPGSFLRWREIWSRLLAPLTLWICELGPSSSRLIKASSLFIDHVEVRNDDSKGLILYTFSEKPELKLETNWNVSKYMIVASYDRKRFSLWLNKGSRFYMRWETQNSTLNRLQVIMLRGERNYETLLPKWTSSANSSIVGEPITGKEAEYIIEEDEKYHIDIVNSNPRSIIMKMNVNASSKVYDVSQANEVCSTTKGSCRLGLQFPNTQYIVLTTPIDGDIVRWYVELSFVARIVTYVAILGFFVIIIYLILMYLGVYDGDSPVIETASREVTETESIVIQSKPNVTYGTCEEDDEESGSSSSSSDELYDEKLCIICYDDQRNCFFVPCGHCATCYDCAQRIMEGENKVCPICRRFIHKVRRLFNS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 934045 936232 + Conep20aG0022800.1 Cone20ag0218 460122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0218 372 Pfam E3 ubiquitin-protein ligase APD1-4, N-terminal 60 128 IPR032008 -
Cone20ag0218 372 PANTHER OS05G0521000 PROTEIN 32 370 - GO:0007049(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone20ag0218 372 SMART ring_2 320 359 IPR001841 -
Cone20ag0218 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 372 IPR013083 -
Cone20ag0218 372 Pfam E3 ubiquitin-protein ligase APD1-4, middle domain 154 256 IPR032010 -
Cone20ag0218 372 SUPERFAMILY RING/U-box 312 366 - -
Cone20ag0218 372 ProSiteProfiles Zinc finger RING-type profile. 320 360 IPR001841 -
Cone20ag0218 372 Pfam Zinc finger, C3HC4 type (RING finger) 317 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0218 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0218 Cone-Chr20:934045 Cone5ag1077 Cone-Chr5:4784911 7.70E-33 dispersed
Cone12ag0153 Cone-Chr12:781533 Cone20ag0218 Cone-Chr20:934045 2.65E-36 wgd
Cone17ag0871 Cone-Chr17:6906433 Cone20ag0218 Cone-Chr20:934045 1.64E-206 wgd
Cone20ag0218 Cone-Chr20:934045 Cone4ag1603 Cone-Chr4:12201736 3.61E-142 wgd
Cone20ag0218 Cone-Chr20:934045 Cone7ag1347 Cone-Chr7:9803405 1.73E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12