Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0219 ATGGCGCGGACCTGTGCTCAGCCGGTGGCAACTACTTTCCTCATCTACTTGTCAATTGGATTCAGCTCCGTTTTCGCCGTTTACTCAGCATCTGTACTTCTTCAAGATTCAACCGATTCTCTCCGGCCTATGATTCTTCCTCTCTATCACTCTTCTTCTAATTTGACGCGTAAAGCCTTCGATCGCAACGATCGTCGCCGTTATCTTCAGAAGTCGGAGCGGCCGCCTACACAGAACGCTCGCTTGAGGCTCCACGACGATCTCCATACCAACGGGTATTACACGACGCGGCTATGGATAGGGACACCTCCACAGGAATTTGCTTTAATCGTGGATACTGGAAGCACCGTGACATACGTGCCTTGCTCTGATTGCGAACAGTGTGGGAAACATCAGGATCCCAGGTTCCAACCTGAGTTATCAGCTACATATCGACCTGTAAGTTGCAATATCGATTGTAACTGTGATGATAGAGGAGTTCAATGCATTTATGAGAGACGGTATGCTGAAATGAGCACTAGCAGTGGTGTGCTAGGTGAAGACCTTCTTTCATTTGGAAATGAAAGCGAACTGGTACCTCAGCGTGCTGTATTTGGTTGTGAAAATGTGGAAACTGGTGATCTTTACTCTCAACGTGCTGATGGCATAATGGGTTTGGGTCGAGGTCCACTCAGTGTGATGGATCAGCTGGTAGATAAGGGTGTTATTAGTGACTCTTTTTCATTGTGTTATGGTGGGATGGATGTAGGTGGTGGTGCCATGATTCTTGGTGGTATATCCCCACTTTCTGGTATGGTATTTACAAACTCAGATCCTTCTCGAAGCCCATATTATAATATAGACCTGAAGGAGATCCATGTTGCTGGAAAGCCCTTGGAGTTGAAATCTAGTGTCTTCAATGGAAAGTATGGAACTGTCTTGGATAGTGGAACGACATATGCTTATTTTCCTGAAAAAGCTTTTAATGCATTTCGGGCTGCTATTAGCAAGAAAACTCATTTCCTGAAACAAATTCATGGGCCTGACCCAAATTTTGATGATATTTGTTTTTCTGGTGCGGGAAGGGATATCTCCCATCTATCAACAGTTTTTCCAGAGGTTGATATGGTATTCAGCAATGGACAAAAGTTATCATTATCCCCAGAGAACTACTTATTCCAGCATACCAAGGTTAGTGGTGCATACTGCCTGGGAATTTTAAAAAATGGGAATGACCAAACCACTCTTTTGGGAGGAATTGTTGTCCGTAATACCTTGGTGACTTATGATCGGGAGAACTCTAAGATCGGATTTTGGAAAACTAATTGTTCCAACCTTTGGAAAACTCTTAGTGCTCCTCTTCCACCAGAACCTAAACCTTCCCATGATCGGAATACATCTACGGATCCTCCTCTTTTATCTCCAGGAGGAGCTCCTCCTGCCCTTCTTCCAGGTGAATTACAAATTGGACTGATAACATTTGATATGATGCTTCATGCGAACAGTTCCTACATAAAGCCCAACTTCACAGAACTTACGGAGTTCATTGCTCATGAGCTTGAAGTTAATGCTTCACAGGTTCGTTTATCAAACTTCACTTCCAATGGGAATGATTTCTTCCTTAGCTGGGCCATCTACCCAGCTCAATCATCCAAATATATTTCTATCACCACTGCCATGAGCATAATTTCCCAATTAAAGGAACACCGAATGCAACTTCCCCAAAAGTTTGGAAGCTATCAACTGGTTGAATTGAACATCGAATCTCCAAAGAAGCAGACATGGTGGAAGGGTCACTTGTGGGAGGTAACTATTGGAGTAACAGTAACTTTGGTTCTTGTCTCATTTGCCGTATTGGGGACATGGTTAATTTGGGGATATCAAAAACGGCATTCTGCTCCTTATGAGCCAATTCGTACCATTGTTCCTGAACAAGAGCTTCAGCCAATTCAGTCTTATTAG 1941 43.53 MARTCAQPVATTFLIYLSIGFSSVFAVYSASVLLQDSTDSLRPMILPLYHSSSNLTRKAFDRNDRRRYLQKSERPPTQNARLRLHDDLHTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSDCEQCGKHQDPRFQPELSATYRPVSCNIDCNCDDRGVQCIYERRYAEMSTSSGVLGEDLLSFGNESELVPQRAVFGCENVETGDLYSQRADGIMGLGRGPLSVMDQLVDKGVISDSFSLCYGGMDVGGGAMILGGISPLSGMVFTNSDPSRSPYYNIDLKEIHVAGKPLELKSSVFNGKYGTVLDSGTTYAYFPEKAFNAFRAAISKKTHFLKQIHGPDPNFDDICFSGAGRDISHLSTVFPEVDMVFSNGQKLSLSPENYLFQHTKVSGAYCLGILKNGNDQTTLLGGIVVRNTLVTYDRENSKIGFWKTNCSNLWKTLSAPLPPEPKPSHDRNTSTDPPLLSPGGAPPALLPGELQIGLITFDMMLHANSSYIKPNFTELTEFIAHELEVNASQVRLSNFTSNGNDFFLSWAIYPAQSSKYISITTAMSIISQLKEHRMQLPQKFGSYQLVELNIESPKKQTWWKGHLWEVTIGVTVTLVLVSFAVLGTWLIWGYQKRHSAPYEPIRTIVPEQELQPIQSY 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 936580 941175 + Conep20aG0022900.1 Cone20ag0219 460123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0219 646 SUPERFAMILY Acid proteases 90 441 IPR021109 -
Cone20ag0219 646 Gene3D Acid Proteases 263 443 IPR021109 -
Cone20ag0219 646 PANTHER ASPARTYL PROTEASES 38 436 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone20ag0219 646 Gene3D Acid Proteases 76 257 IPR021109 -
Cone20ag0219 646 FunFam Aspartyl protease family protein 78 257 - -
Cone20ag0219 646 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone20ag0219 646 PRINTS Pepsin (A1) aspartic protease family signature 305 316 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone20ag0219 646 PRINTS Pepsin (A1) aspartic protease family signature 100 120 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone20ag0219 646 MobiDBLite consensus disorder prediction 445 470 - -
Cone20ag0219 646 FunFam Eukaryotic aspartyl protease family protein 265 440 - -
Cone20ag0219 646 Pfam Xylanase inhibitor N-terminal 94 258 IPR032861 -
Cone20ag0219 646 Pfam Xylanase inhibitor C-terminal 278 431 IPR032799 -
Cone20ag0219 646 CDD pepsin_A_like_plant 93 436 IPR034161 -
Cone20ag0219 646 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 109 120 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone20ag0219 646 ProSiteProfiles Peptidase family A1 domain profile. 94 432 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0219 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0871 Cone-Chr17:6906433 Cone20ag0219 Cone-Chr20:936580 0 dispersed
Cone20ag0219 Cone-Chr20:936580 Cone9ag1207 Cone-Chr9:8711819 1.81E-37 dispersed
Cone12ag0155 Cone-Chr12:788363 Cone20ag0219 Cone-Chr20:936580 3.46E-226 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64