Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0229 ATGGCTCTAGAAGCTTTAAACTCTCCGACCACTGCTGCGGCTCCATTTCACTACGAGGACTCTAACCTCCACTCCGTCGAGCCGTGGACCAAACGCAAGCGGTCGAAGCGAACACGCTTCGACAACCCTGCCACGGAGGAAGAATACCTAGCTCTCTGCCTAATCATGCTCGCTCGTGGTGGCTCTGTTGGATCTGCTTTCCCCGGAGCATCCGCCGCCGGACACCGCCAGCAATTTGCCTCTACTCCTGCTGCGGCTCCGGCTGCTCAGACAGAGGAGGCTGCAGTAAAATTTCTCCACAAGTGCTCTGTCTGCAACAAGGCGTTTTCCTCTTACCAGGCTCTAGGCGGACACAAGGCGAGTCACCGGAAACAACAAGCTCTAGGAGAGGATCAGTCTACGTCCTCTACTACAACGACATCCGCCACAGCCTCTGCCTCCGCTGGCGGTGTTAGGTTACACGAGTGCTCTATCTGTCACAAATCATTCCCCACCGGTCAAGCCTTGGGCGGACACAAGCGATGTCACTATGAAGGAAATACCGGCGCTAGTAACAATAACATGAGTAGCGCCGTGACGTCATCTGAAGGAGTAGGTTCAACCAATACGCAAAGCCATAGCCACCGGCACTTCGATCTGAACCTCCCTGCCTTGCCGGAAATCTTCATCTCCGGCGACGACGAGGTCGAGAGTCCTCTGCCCACTAAGAAGCCCCGCCTCCTACTTGTGTTGCCGAAATCACAAATCTCCGAAGATCGTTAA 762 54.99 MALEALNSPTTAAAPFHYEDSNLHSVEPWTKRKRSKRTRFDNPATEEEYLALCLIMLARGGSVGSAFPGASAAGHRQQFASTPAAAPAAQTEEAAVKFLHKCSVCNKAFSSYQALGGHKASHRKQQALGEDQSTSSTTTTSATASASAGGVRLHECSICHKSFPTGQALGGHKRCHYEGNTGASNNNMSSAVTSSEGVGSTNTQSHSHRHFDLNLPALPEIFISGDDEVESPLPTKKPRLLLVLPKSQISEDR 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 990984 992012 - Conep20aG0023900.1 Cone20ag0229 460133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0229 253 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Cone20ag0229 253 MobiDBLite consensus disorder prediction 181 208 - -
Cone20ag0229 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Cone20ag0229 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Cone20ag0229 253 SUPERFAMILY beta-beta-alpha zinc fingers 100 176 IPR036236 -
Cone20ag0229 253 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 27 220 IPR044653 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone20ag0229 253 MobiDBLite consensus disorder prediction 127 146 - -
Cone20ag0229 253 Pfam C2H2-type zinc finger 154 177 IPR013087 -
Cone20ag0229 253 Pfam C2H2-type zinc finger 100 125 IPR013087 -
Cone20ag0229 253 MobiDBLite consensus disorder prediction 121 146 - -
Cone20ag0229 253 SMART c2h2final6 100 122 IPR013087 -
Cone20ag0229 253 SMART c2h2final6 154 176 IPR013087 -
Cone20ag0229 253 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Cone20ag0229 253 Gene3D Classic Zinc Finger 99 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0229 Cone-Chr20:990984 Cone3ag0320 Cone-Chr3:1644215 2.30E-13 dispersed
Cone12ag1052 Cone-Chr12:8745171 Cone20ag0229 Cone-Chr20:990984 5.87E-56 wgd
Cone17ag0883 Cone-Chr17:6995691 Cone20ag0229 Cone-Chr20:990984 1.64E-137 wgd
Cone20ag0229 Cone-Chr20:990984 Cone4ag1609 Cone-Chr4:12234412 4.00E-68 wgd
Cone20ag0229 Cone-Chr20:990984 Cone7ag1343 Cone-Chr7:9773254 5.48E-84 wgd
Cone20ag0229 Cone-Chr20:990984 Cone8ag1084 Cone-Chr8:9781974 3.29E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45566 PF02362 B3 1.10E-08 CL0405 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0229 - - - 0.0